Publications by authors named "Marcel Huntemann"

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Genome sequence of DSM 41897.
Braden Christenson, Imen Nouioui, Chris Daum, Marcel Huntemann, Rekha Seshadri

Microbiol Resour Announc· September 2025

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High-quality draft genome sequence of DSM 44931.
Colleen B Ahern, I-Min Chen, Marcel Huntemann, Natalia Ivanova, Nikos Kyrpides

Microbiol Resour Announc· September 2025

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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
Matthew Kellom, Maureen Berg, I-Min A Chen, Ken Chu, Alicia Clum, Marcel Huntemann

mSystems· August 2025

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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
Clara A Fuchsman, Jacob A Cram, Marcel Huntemann, Robert Riley, Brian Foster

Microbiol Resour Announc· April 2025

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Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Marcel Huntemann

Sci Data· January 2025

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Marcel Huntemann

Sci Data· November 2024

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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann

Sci Data· September 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna Plubell, Gabriella Chebli, Marcel Huntemann

bioRxiv· September 2024

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Metatranscriptomes of California grassland soil microbial communities in response to rewetting.
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux

Microbiol Resour Announc· June 2024

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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster

Microbiol Resour Announc· March 2024

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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting.
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster

Microbiol Resour Announc· February 2024

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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Antonio Pedro Camargo, Lee Call, Simon Roux, Stephen Nayfach, Marcel Huntemann

Nucleic Acids Res· January 2024

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Terabase-Scale Coassembly of a Tropical Soil Microbiome.
Robert Riley, Robert M Bowers, Antonio Pedro Camargo, Ashley Campbell, Rob Egan, Marcel Huntemann

Microbiol Spectr· August 2023

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Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.
Antonio P Camargo, Rafael S C de Souza, Juliana Jose, Isabel R Gerhardt, Ricardo A Dante, Marcel Huntemann

ISME J· March 2023

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Discovery of a novel filamentous prophage in the genome of the microsymbiont STM 6018.
Agnieszka Klonowska, Julie Ardley, Lionel Moulin, Jaco Zandberg, Delphine Patrel, Marcel Huntemann

Front Microbiol· February 2023

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The IMG/M data management and analysis system v.7: content updates and new features.
I-Min A Chen, Ken Chu, Krishnaveni Palaniappan, Anna Ratner, Jinghua Huang, Marcel Huntemann

Nucleic Acids Res· January 2023

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Expanding the genomic encyclopedia of with 824 isolate reference genomes.
Rekha Seshadri, Simon Roux, Katharina J Huber, Dongying Wu, Sora Yu, Marcel Huntemann

Cell Genom· December 2022

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Draft Metagenome Sequences of the (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.
Bryan T Piatkowski, Dana L Carper, Alyssa A Carrell, I-Min A Chen, Alicia Clum, Marcel Huntemann

Microbiol Resour Announc· October 2022

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Multiomics in the central Arctic Ocean for benchmarking biodiversity change.
Thomas Mock, William Boulton, John-Paul Balmonte, Kevin Barry, Stefan Bertilsson, Marcel Huntemann

PLoS Biol· October 2022

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Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium.
Gina Chaput, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Marcel Huntemann

Microbiol Spectr· June 2022

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Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.
Bin Hu, Shane Canon, Emiley A Eloe-Fadrosh, Anubhav, Michal Babinski, Marcel Huntemann

Front Bioinform· January 2022

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The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Marcel Huntemann

Nat Commun· September 2021

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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria.
Ryan D Ward, Jason E Stajich, Jeffrey R Johansen, Marcel Huntemann, Alicia Clum

Microbiol Resour Announc· June 2021

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Genome Analysis of a Verrucomicrobial Endosymbiont With a Tiny Genome Discovered in an Antarctic Lake.
Timothy J Williams, Michelle A Allen, Natalia Ivanova, Marcel Huntemann, Sabrina Haque

Front Microbiol· June 2021

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Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of and Three Candidate Species From China and Japan.
Scott C Thomas, Devon Payne, Kevin O Tamadonfar, Cale O Seymour, Jian-Yu Jiao, Marcel Huntemann

Front Microbiol· May 2021

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