Publications by authors named "Emiley A Eloe-Fadrosh"

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A genomic view of Earth's biomes.
Gitta Szabó, Emiley A Eloe-Fadrosh, Jennifer Pett-Ridge, Tanja Woyke

Nat Rev Genet· January 2026

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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies.
Julia M Kelliher, Chloe Mirzayi, Sarah R Bordenstein, Aaron Oliver, Christina A Kellogg, Emiley A Eloe-Fadrosh

Nat Microbiol· December 2025

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Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient.
Gareth Trubl, Simon Roux, Mikayla A Borton, Arvind Varsani, Yueh-Fen Li, Emiley A Eloe-Fadrosh

Nat Commun· December 2025

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Meta-virus resource (MetaVR): expanding the frontiers of viral diversity with 24 million uncultivated virus genomes.
Mateus B Fiamenghi, Antonio Pedro Camargo, Iro N Chasapi, Fotis A Baltoumas, Simon Roux, Emiley A Eloe-Fadrosh

Nucleic Acids Res· November 2025

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Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs.
Marike Palmer, Nancy O Nou, Lara A Turello, Carolyn E Power, John C Ong, Emiley A Eloe-Fadrosh

Syst Appl Microbiol· September 2025

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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
Matthew Kellom, Maureen Berg, I-Min A Chen, Ken Chu, Alicia Clum, Emiley A Eloe-Fadrosh

mSystems· August 2025

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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
Clara A Fuchsman, Jacob A Cram, Marcel Huntemann, Robert Riley, Brian Foster, Emiley A Eloe-Fadrosh

Microbiol Resour Announc· April 2025

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A blueprint for contemporary studies of microbiomes.
Laure B Bindels, Joy E M Watts, Kevin R Theis, Víctor J Carrion, Adam Ossowicki, Emiley A Eloe-Fadrosh

Microbiome· April 2025

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Microbiome data management in action workshop: Atlanta, GA, USA, June 12-13, 2024.
Julia M Kelliher, Mashael Aljumaah, Sarah R Bordenstein, J Rodney Brister, Patrick S G Chain, Emiley A Eloe-Fadrosh

Environ Microbiome· April 2025

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A cost and community perspective on the barriers to microbiome data reuse.
Julia M Kelliher, Leah Y D Johnson, Francisca E Rodriguez, Jaclyn K Saunders, Marie E Kroeger, Emiley A Eloe-Fadrosh

Front Bioinform· April 2025

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Climate-driven succession in marine microbiome biodiversity and biogeochemical function.
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Emiley A Eloe-Fadrosh

Nat Commun· April 2025

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Quantifying the impact of workshops promoting microbiome data standards and data stewardship.
Julia M Kelliher, Francisca E Rodriguez, Leah Y D Johnson, Simon Roux, Montana Smith, Emiley A Eloe-Fadrosh

Sci Rep· March 2025

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A functional microbiome catalogue crowdsourced from North American rivers.
Mikayla A Borton, Bridget B McGivern, Kathryn R Willi, Ben J Woodcroft, Annika C Mosier, Emiley A Eloe-Fadrosh

Nature· January 2025

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Author Correction: Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Emiley A Eloe-Fadrosh

Sci Data· January 2025

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Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource.
Julia M Kelliher, Yan Xu, Mark C Flynn, Michal Babinski, Shane Canon, Emiley A Eloe-Fadrosh

Comput Struct Biotechnol J· December 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna L Plubell, Gabriella Chebli, Emiley A Eloe-Fadrosh

Sci Data· November 2024

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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Emiley A Eloe-Fadrosh

Sci Data· September 2024

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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days.
Brook L Nunn, Emma Timmins-Schiffman, Miranda C Mudge, Deanna Plubell, Gabriella Chebli, Emiley A Eloe-Fadrosh

bioRxiv· September 2024

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Climate-driven succession in marine microbiome biodiversity and biogeochemical function.
Alyse A Larkin, Melissa L Brock, Adam J Fagan, Allison R Moreno, Skylar D Gerace, Emiley A Eloe-Fadrosh

Res Sq· August 2024

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Metatranscriptomes of California grassland soil microbial communities in response to rewetting.
Peter F Chuckran, Katerina Estera-Molina, Marcel Huntemann, Brian Foster, Simon Roux, Emiley A Eloe-Fadrosh

Microbiol Resour Announc· June 2024

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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
Emiley A Eloe-Fadrosh, Christopher J Mungall, Mark Andrew Miller, Montana Smith, Sujay Sanjeev Patil

Methods Mol Biol· May 2024

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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments.
Christopher Schadt, Stanton Martin, Alyssa Carrell, Allison Fortner, Dan Hopp, Emiley A Eloe-Fadrosh

Sci Data· April 2024

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Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Emiley A Eloe-Fadrosh

Microbiol Resour Announc· March 2024

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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting.
Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Emiley A Eloe-Fadrosh

Microbiol Resour Announc· February 2024

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High fat intake sustains sorbitol intolerance after antibiotic-mediated Clostridia depletion from the gut microbiota.
Jee-Yon Lee, Connor R Tiffany, Scott P Mahan, Matthew Kellom, Andrew W L Rogers, Emiley A Eloe-Fadrosh

Cell· February 2024

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