Publications by authors named "David M Needham"

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More realistic plankton simulation models will improve projections of ocean ecosystem responses to global change.
Kevin J Flynn, Angus Atkinson, John Beardall, John A Berges, Maarten Boersma, David M Needham

Nat Ecol Evol· September 2025

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Arctic Ocean virus communities and their seasonality, bipolarity, and prokaryotic associations.
Alyzza M Calayag, Taylor Priest, Ellen Oldenburg, Jan Muschiol, Ovidiu Popa, David M Needham

Nat Commun· July 2025

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Greater host influence and promiscuity: how an invasive seaweed host has advantages over co-occurring natives.
Marjan Ghotbi, Guido Bonthond, Mitra Ghotbi, Sven Künzel, David M Needham

ISME Commun· January 2025

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Non-photosynthetic lineages sibling to Cyanobacteria associate with eukaryotes in the open ocean.
Fabian Wittmers, Jacqueline Comstock, Camille Poirier, David M Needham, Frederik Schulz

Curr Biol· November 2024

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Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions.
Rachel C Harbeitner, Fabian Wittmers, Charmaine C M Yung, Charlotte A Eckmann, Elisabeth Hehenberger, David M Needham

PLoS One· April 2024

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Genomes from Uncultivated Pelagiphages Reveal Multiple Phylogenetic Clades Exhibiting Extensive Auxiliary Metabolic Genes and Cross-Family Multigene Transfers.
Fabian Wittmers, David M Needham, Elisabeth Hehenberger, Stephen J Giovannoni, Alexandra Z Worden

mSystems· October 2022

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A comparative study of flow cytometry-sorted communities and shotgun viral metagenomics in a Singapore municipal wastewater treatment plant.
Xiaoqiong Gu, Yi Yang, Feijian Mao, Wei Lin Lee, Federica Armas, David M Needham

Imeta· September 2022

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The microbiome of a bacterivorous marine choanoflagellate contains a resource-demanding obligate bacterial associate.
David M Needham, Camille Poirier, Charles Bachy, Emma E George, Susanne Wilken

Nat Microbiol· September 2022

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High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome.
Wenshan Zheng, Shijie Zhao, Yehang Yin, Huidan Zhang, David M Needham

Science· June 2022

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Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts.
Charles Bachy, Charmaine C M Yung, David M Needham, Maria Consuelo Gazitúa, Simon Roux

ISME J· November 2021

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Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S.
Yi-Chun Yeh, Jesse McNichol, David M Needham, Erin B Fichot, Lyria Berdjeb

Environ Microbiol· June 2021

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Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans.
Chang Jae Choi, Valeria Jimenez, David M Needham, Camille Poirier, Charles Bachy

Front Microbiol· September 2020

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Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems.
Amy E Zimmerman, Cristina Howard-Varona, David M Needham, Seth G John, Alexandra Z Worden

Nat Rev Microbiol· January 2020

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Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes.
David M Needham, Camille Poirier, Elisabeth Hehenberger, Valeria Jiménez, Jarred E Swalwell

Philos Trans R Soc Lond B Biol Sci· November 2019

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A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.
David M Needham, Susumu Yoshizawa, Toshiaki Hosaka, Camille Poirier, Chang Jae Choi

Proc Natl Acad Sci U S A· October 2019

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Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria.
Laura Gómez-Consarnau, David M Needham, Peter K Weber, Jed A Fuhrman, Xavier Mayali

Front Microbiol· June 2019

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Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes.
Ella T Sieradzki, J Cesar Ignacio-Espinoza, David M Needham, Erin B Fichot, Jed A Fuhrman

Nat Commun· March 2019

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Vertical and Seasonal Patterns Control Bacterioplankton Communities at Two Horizontally Coherent Coastal Upwelling Sites off Galicia (NW Spain).
Víctor Hernando-Morales, Marta M Varela, David M Needham, Jacob Cram, Jed A Fuhrman

Microb Ecol· November 2018

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Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling.
David M Needham, Erin B Fichot, Ellice Wang, Lyria Berdjeb, Jacob A Cram

ISME J· October 2018

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Short-term dynamics and interactions of marine protist communities during the spring-summer transition.
Lyria Berdjeb, Alma Parada, David M Needham, Jed A Fuhrman

ISME J· August 2018

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Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run.
Yi-Chun Yeh, David M Needham, Ella T Sieradzki, Jed A Fuhrman

mSystems· April 2018

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Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters.
David M Needham, Rohan Sachdeva, Jed A Fuhrman

ISME J· July 2017

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Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems.
Nathan A Ahlgren, Yangyang Chen, David M Needham, Alma E Parada, Rohan Sachdeva

Environ Microbiol· June 2017

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Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.
Alma E Parada, David M Needham, Jed A Fuhrman

Environ Microbiol· May 2016

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Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom.
David M Needham, Jed A Fuhrman

Nat Microbiol· February 2016

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