Publications by authors named "Bernhard Renard"

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The AIR·MS data platform for artificial intelligence in healthcare.
Pablo Guerrero, Morten Ernebjerg, Thomas Holst, David Weese, Herve DiBello, Bernhard Renard

JAMIA Open· December 2025

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Disease duration impacts intestinal gene expression profiles in Crohn's disease but not in ulcerative colitis.
Susanne Ibing, Christopher Tastad, Bernhard Y Renard, Louis J Cohen, Carmen Argmann

J Crohns Colitis· November 2025

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Distinct perturbances in metabolic pathways associate with disease progression in inflammatory bowel disease.
Arno R Bourgonje, Susanne Ibing, Alexandra E Livanos, Danielle Y Ganjian, Carmen Argmann, Bernhard Y Renard

J Crohns Colitis· June 2025

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Electronic Health Records-based identification of newly diagnosed Crohn's Disease cases.
Susanne Ibing, Julian Hugo, Florian Borchert, Linea Schmidt, Caroline Benson, Bernhard Y Renard

Artif Intell Med· January 2025

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End-to-end simulation of nanopore sequencing signals with feed-forward transformers.
Denis Beslic, Martin Kucklick, Susanne Engelmann, Stephan Fuchs, Bernhard Y Renard

Bioinformatics· December 2024

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Moving Toward Metaproteogenomics: A Computational Perspective on Analyzing Microbial Samples via Proteogenomics.
Franziska Singer, Mathias Kuhring, Bernhard Y Renard, Thilo Muth

Methods Mol Biol· October 2024

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PEPerMINT: peptide abundance imputation in mass spectrometry-based proteomics using graph neural networks.
Tobias Pietz, Sukrit Gupta, Christoph N Schlaffner, Saima Ahmed, Hanno Steen, Bernhard Y Renard

Bioinformatics· September 2024

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Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
Jens-Uwe Ulrich, Bernhard Y Renard

Genome Res· July 2024

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Hitac: a hierarchical taxonomic classifier for fungal ITS sequences compatible with QIIME2.
Fábio M Miranda, Vasco C Azevedo, Rommel J Ramos, Bernhard Y Renard, Vitor C Piro

BMC Bioinformatics· July 2024

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An artificial intelligence-assisted clinical framework to facilitate diagnostics and translational discovery in hematologic neoplasia.
Ming Tang, Željko Antić, Pedram Fardzadeh, Stefan Pietzsch, Charlotte Schröder, Bernhard Y Renard

EBioMedicine· June 2024

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The gut microbiome, resistome, and mycobiome in preterm newborn infants and mouse pups: lack of lasting effects by antimicrobial therapy or probiotic prophylaxis.
Elizabeth Y Yuu, Christoph Bührer, Tim Eckmanns, Marcus Fulde, Michaela Herz, Bernhard Y Renard

Gut Pathog· May 2024

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The three-year evolution of Germany's Digital Therapeutics reimbursement program and its path forward.
Linea Schmidt, Marc Pawlitzki, Bernhard Y Renard, Sven G Meuth, Lars Masanneck

NPJ Digit Med· May 2024

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Nanopore adaptive sampling effectively enriches bacterial plasmids.
Jens-Uwe Ulrich, Lennard Epping, Tanja Pilz, Birgit Walther, Kerstin Stingl, Bernhard Y Renard

mSystems· March 2024

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MpoxRadar: a worldwide MPXV genomic surveillance dashboard.
Ferdous Nasri, Kunaphas Kongkitimanon, Alice Wittig, Jorge Sánchez Cortés, Annika Brinkmann, Bernhard Y Renard

Nucleic Acids Res· July 2023

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LazyFox: fast and parallelized overlapping community detection in large graphs.
Tim Garrels, Athar Khodabakhsh, Bernhard Y Renard, Katharina Baum

PeerJ Comput Sci· April 2023

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Multi-Cell Line Analysis of Lysosomal Proteomes Reveals Unique Features and Novel Lysosomal Proteins.
Fatema Akter, Sara Bonini, Srigayatri Ponnaiyan, Bianca Kögler-Mohrbacher, Florian Bleibaum, Bernhard Y Renard

Mol Cell Proteomics· March 2023

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Secondary data for global health digitalisation.
Anatol-Fiete Näher, Carina N Vorisek, Sophie A I Klopfenstein, Moritz Lehne, Sylvia Thun, Bernhard Y Renard

Lancet Digit Health· February 2023

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Common mouse models of tauopathy reflect early but not late human disease.
Kathrin Wenger, Arthur Viode, Christoph N Schlaffner, Patrick van Zalm, Long Cheng, Bernhard Renard

Mol Neurodegener· February 2023

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Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly.
Denis Beslic, Georg Tscheuschner, Bernhard Y Renard, Michael G Weller, Thilo Muth

Brief Bioinform· January 2023

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Contamination detection and microbiome exploration with GRIMER.
Vitor C Piro, Bernhard Y Renard

Gigascience· December 2022

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CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
Alice Wittig, Fábio Miranda, Martin Hölzer, Tom Altenburg, Jakub M Bartoszewicz, Bernhard Y Renard

Bioinformatics· September 2022

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DrDimont: explainable drug response prediction from differential analysis of multi-omics networks.
Pauline Hiort, Julian Hugo, Justus Zeinert, Nataniel Müller, Spoorthi Kashyap, Bernhard Y Renard

Bioinformatics· September 2022

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Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection.
Jakub M Bartoszewicz, Ferdous Nasri, Melania Nowicka, Bernhard Y Renard

Bioinformatics· September 2022

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PathoLive-Real-Time Pathogen Identification from Metagenomic Illumina Datasets.
Simon H Tausch, Tobias P Loka, Jakob M Schulze, Andreas Andrusch, Jeanette Klenner, Bernhard Y Renard

Life (Basel)· August 2022

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ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing.
Jens-Uwe Ulrich, Ahmad Lutfi, Kilian Rutzen, Bernhard Y Renard

Bioinformatics· June 2022

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