Publications by authors named "Blake Hovde"

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Use to identify commercially available American Type Culture Collection strains based on sequence queries.
Samuel I Koehler, Earl A Middlebrook, Blake T Hovde, Erik R Hanschen

PeerJ· September 2025

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Protocol to detect dilution cycles in chemostat experiments and estimate growth rate slopes with linear modeling with R software chemostat_regression.
Samuel I Koehler, Jennifer T Pentz, Earl A Middlebrook, Blake T Hovde, Erik R Hanschen

STAR Protoc· September 2025

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The draft genome sequence of a predatory bacterium infecting a eukaryotic alga.
Monica R Mascarenas, Blake Hovde, Thomas Biondi, Yuliya A Kunde, Phillip Lee

Microbiol Resour Announc· August 2025

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Draft genome sequences of related sp. isolates from two disparate cave systems.
Earl Middlebrook, Jennifer Hathaway, Anastasia Pittis, George Abernathy, Karen Davenport, Blake Hovde

Microbiol Resour Announc· June 2025

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Global characterization of biosynthetic gene clusters in non-model eukaryotes using domain architectures.
Taehyung Kwon, Blake T Hovde

Sci Rep· January 2024

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CRISPR/Cas9 Directed Reprogramming of iPSC for Accelerated Motor Neuron Differentiation Leads to Dysregulation of Neuronal Fate Patterning and Function.
Katie Davis-Anderson, Sofiya Micheva-Viteva, Emilia Solomon, Blake Hovde, Elisa Cirigliano

Int J Mol Sci· November 2023

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Correction for Sanchez et al., "The Genome Sequence of an Algal Strain of QH25".
Monica R Sanchez, Thomas C Biondi, Yuliya A Kunde, Wyatt Eng, Jakob O Nalley, Blake T Hovde

Microbiol Resour Announc· March 2023

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Addressing the pervasive scarcity of structural annotation in eukaryotic algae.
Taehyung Kwon, Erik R Hanschen, Blake T Hovde

Sci Rep· January 2023

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The Genome Sequence of an Algal Strain of QH25.
Monica R Sanchez, Thomas C Biondi, Yuliya A Kunde, Wyatt Eng, Jakob O Nalley, Blake T Hovde

Microbiol Resour Announc· December 2022

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High-Quality Genome Assembly of Nannochloris desiccata 2437 and Its Associated Bacterial Community.
Claire K Sanders, Thomas C Biondi, Wyatt Eng, Yuliya A Kunde, Blake T Hovde

Microbiol Resour Announc· July 2022

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Phylogenetic analyses and reclassification of the oleaginous marine species Nannochloris sp. "desiccata" (Trebouxiophyceae, Chlorophyta), formerly Chlorella desiccata, supported by a high-quality genome assembly.
Claire K Sanders, Erik R Hanschen, Thomas C Biondi, Blake T Hovde, Yuliya A Kunde

J Phycol· June 2022

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Global transcriptome profile of the developmental principles of in vitro iPSC-to-motor neuron differentiation.
Emilia Solomon, Katie Davis-Anderson, Blake Hovde, Sofiya Micheva-Viteva, Jennifer Foster Harris

BMC Mol Cell Biol· February 2021

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Development of a high-productivity, halophilic, thermotolerant microalga .
Lukas R Dahlin, Alida T Gerritsen, Calvin A Henard, Stefanie Van Wychen, Jeffrey G Linger, Blake T Hovde

Commun Biol· April 2020

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Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania.
Robab Katani, Megan A Schilling, Beatus Lyimo, Triza Tonui, Isabella M Cattadori, Blake T Hovde

Sci Rep· December 2019

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Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of .
Blake T Hovde, Hajnalka E Daligault, Erik R Hanschen, Yuliya A Kunde, Matthew B Johnson

Toxins (Basel)· November 2019

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High-Quality Draft Genome Sequence of the Green Alga (Chlorophyta) Generated from PacBio Sequencing.
Christina R Steadman Tyler, Blake T Hovde, Hajnalka E Daligault, Xiang Li Zhang, Yuliya Kunde

Microbiol Resour Announc· October 2019

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New Human Chromosomal Sites with "Safe Harbor" Potential for Targeted Transgene Insertion.
Stefan Pellenz, Michael Phelps, Weiliang Tang, Blake T Hovde, Ryan B Sinit

Hum Gene Ther· July 2019

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High-throughput phenotyping of cell-to-cell interactions in gel microdroplet pico-cultures.
Juliette Ohan, Benjamin Pelle, Pulak Nath, J-H Huang, Blake Hovde

Biotechniques· May 2019

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Transposon insertional mutagenesis in reveals -acting effects influencing species-dependent essential genes.
Monica R Sanchez, Celia Payen, Frances Cheong, Blake T Hovde, Sarah Bissonnette

Genome Res· March 2019

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Nuclear, Chloroplast, and Mitochondrial Genome Sequences of the Prospective Microalgal Biofuel Strain .
C Raul Gonzalez-Esquer, Scott N Twary, Blake T Hovde, Shawn R Starkenburg

Genome Announc· January 2018

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Draft Genome Sequence of Sorghum Grain Mold Fungus Epicoccum sorghinum, a Producer of Tenuazonic Acid.
Rodrigo C Oliveira, Karen W Davenport, Blake Hovde, Danielle Silva, Patrick S G Chain

Genome Announc· January 2017

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Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin.
Kathryn R Fixen, Shawn R Starkenburg, Blake T Hovde, Shannon L Johnson, Chloe R Deodato

Genome Announc· November 2016

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Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae).
Blake T Hovde, Chloe R Deodato, Heather M Hunsperger, Scott A Ryken, Will Yost

PLoS Genet· April 2016

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The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles.
Blake T Hovde, Shawn R Starkenburg, Heather M Hunsperger, Laina D Mercer, Chloe R Deodato

BMC Genomics· July 2014

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Comprehensive homing endonuclease target site specificity profiling reveals evolutionary constraints and enables genome engineering applications.
Hui Li, Umut Y Ulge, Blake T Hovde, Lindsey A Doyle, Raymond J Monnat

Nucleic Acids Res· March 2012

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