Publications by authors named "Brian D Aevermann"

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Cross-Comparison of Inflammatory Skin Disease Transcriptomics Identifies PTEN as a Pathogenic Disease Classifier in Cutaneous Lupus Erythematosus.
Brian D Aevermann, Jeremy Di Domizio, Peter Olah, Fanny Saidoune, John M Armstrong

J Invest Dermatol· February 2024

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Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain.
Yun Zhang, Jeremy A Miller, Jeongbin Park, Boudewijn P Lelieveldt, Brian Long, Brian D Aevermann

Sci Rep· June 2023

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Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies.
Shawn Zheng Kai Tan, Huseyin Kir, Brian D Aevermann, Tom Gillespie, Nomi Harris

Sci Data· April 2023

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Brain Data Standards - A method for building data-driven cell-type ontologies.
Shawn Zheng Kai Tan, Huseyin Kir, Brian D Aevermann, Tom Gillespie, Nomi Harris

Sci Data· January 2023

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FastMix: a versatile data integration pipeline for cell type-specific biomarker inference.
Yun Zhang, Hao Sun, Aishwarya Mandava, Brian D Aevermann, Tobias R Kollmann

Bioinformatics· October 2022

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Machine learning for cell type classification from single nucleus RNA sequencing data.
Huy Le, Beverly Peng, Janelle Uy, Daniel Carrillo, Yun Zhang, Brian D Aevermann

PLoS One· September 2022

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Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian, Brian D Aevermann

Nature· April 2022

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The genome and preliminary single-nuclei transcriptome of Lemna minuta reveals mechanisms of invasiveness.
Bradley W Abramson, Mark Novotny, Nolan T Hartwick, Kelly Colt, Brian D Aevermann

Plant Physiol· February 2022

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Machine Learning-Based Single Cell and Integrative Analysis Reveals That Baseline mDC Predisposition Correlates With Hepatitis B Vaccine Antibody Response.
Brian D Aevermann, Casey P Shannon, Mark Novotny, Rym Ben-Othman, Bing Cai

Front Immunol· December 2021

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Comparative cellular analysis of motor cortex in human, marmoset and mouse.
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian, Brian D Aevermann

Nature· October 2021

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FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test.
Yun Zhang, Brian D Aevermann, Trygve E Bakken, Jeremy A Miller, Rebecca D Hodge

Brief Bioinform· July 2021

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Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis.
Ni Huang, Paola Perez, Takafumi Kato, Yu Mikami, Kenichi Okuda, Brian D Aevermann

medRxiv· October 2020

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Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons.
Rebecca D Hodge, Jeremy A Miller, Mark Novotny, Brian E Kalmbach, Jonathan T Ting, Brian D Aevermann

Nat Commun· March 2020

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Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.
Eszter Boldog, Trygve E Bakken, Rebecca D Hodge, Mark Novotny, Brian D Aevermann

Nat Neurosci· September 2018

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Cell type discovery using single-cell transcriptomics: implications for ontological representation.
Brian D Aevermann, Mark Novotny, Trygve Bakken, Jeremy A Miller, Alexander D Diehl

Hum Mol Genet· May 2018

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Cell type discovery and representation in the era of high-content single cell phenotyping.
Trygve Bakken, Lindsay Cowell, Brian D Aevermann, Mark Novotny, Rebecca Hodge

BMC Bioinformatics· December 2017

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Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
Yun Zhang, Brian D Aevermann, Tavis K Anderson, David F Burke, Gwenaelle Dauphin

Nucleic Acids Res· January 2017

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Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons.
Suguna Rani Krishnaswami, Rashel V Grindberg, Mark Novotny, Pratap Venepally, Benjamin Lacar, Brian D Aevermann

Nat Protoc· March 2016

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A comprehensive collection of systems biology data characterizing the host response to viral infection.
Brian D Aevermann, Brett E Pickett, Sanjeev Kumar, Edward B Klem, Sudhakar Agnihothram

Sci Data· December 2015

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Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.
Alexandra J Lee, Suman R Das, Wei Wang, Theresa Fitzgerald, Brett E Pickett, Brian D Aevermann

J Virol· May 2015

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Comparative analysis of the small heat shock proteins in three angiosperm genomes identifies new subfamilies and reveals diverse evolutionary patterns.
Elizabeth R Waters, Brian D Aevermann, Zipporah Sanders-Reed

Cell Stress Chaperones· October 2009

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A comparative genomic analysis of the small heat shock proteins in Caenorhabditis elegans and briggsae.
Brian D Aevermann, Elizabeth R Waters

Genetica· July 2008

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