Publications by authors named "Brian D Weitzner"

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Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites.
Parisa Hosseinzadeh, Paris R Watson, Timothy W Craven, Xinting Li, Stephen Rettie, Brian D Weitzner

Nat Commun· June 2021

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The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8.
Miklos Guttman, Neal N Padte, Yaoxing Huang, Jian Yu, Gabriel J Rocklin, Brian D Weitzner

Sci Rep· August 2020

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Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam

Nat Methods· July 2020

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Better together: Elements of successful scientific software development in a distributed collaborative community.
Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti

PLoS Comput Biol· May 2020

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Integration of the Rosetta suite with the python software stack via reproducible packaging and core programming interfaces for distributed simulation.
Alexander S Ford, Brian D Weitzner, Christopher D Bahl

Protein Sci· January 2020

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A computational method for design of connected catalytic networks in proteins.
Brian D Weitzner, Yakov Kipnis, A Gerard Daniel, Donald Hilvert, David Baker

Protein Sci· December 2019

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De novo design of potent and selective mimics of IL-2 and IL-15.
Daniel-Adriano Silva, Shawn Yu, Umut Y Ulge, Jamie B Spangler, Kevin M Jude, Brian D Weitzner

Nature· January 2019

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RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.
Jared Adolf-Bryfogle, Oleks Kalyuzhniy, Michael Kubitz, Brian D Weitzner, Xiaozhen Hu

PLoS Comput Biol· April 2018

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I am a United Academic Worker.
Brian D Weitzner

Science· October 2017

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Modeling and docking of antibody structures with Rosetta.
Brian D Weitzner, Jeliazko R Jeliazkov, Sergey Lyskov, Nicholas Marze, Daisuke Kuroda

Nat Protoc· February 2017

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Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint.
Brian D Weitzner, Jeffrey J Gray

J Immunol· January 2017

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A Framework to Simplify Combined Sampling Strategies in Rosetta.
Justin R Porter, Brian D Weitzner, Oliver F Lange

PLoS One· June 2016

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An Integrated Framework Advancing Membrane Protein Modeling and Design.
Rebecca F Alford, Julia Koehler Leman, Brian D Weitzner, Amanda M Duran, Drew C Tilley

PLoS Comput Biol· September 2015

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The origin of CDR H3 structural diversity.
Brian D Weitzner, Roland L Dunbrack, Jeffrey J Gray

Structure· February 2015

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Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.
Brian D Weitzner, Daisuke Kuroda, Nicholas Marze, Jianqing Xu, Jeffrey J Gray

Proteins· August 2014

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Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).
Sergey Lyskov, Fang-Chieh Chou, Shane Ó Conchúir, Bryan S Der, Kevin Drew, Brian D Weitzner

PLoS One· April 2014

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Real-time PyMOL visualization for Rosetta and PyRosetta.
Evan H Baugh, Sergey Lyskov, Brian D Weitzner, Jeffrey J Gray

PLoS One· February 2012

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.
Sidhartha Chaudhury, Monica Berrondo, Brian D Weitzner, Pravin Muthu, Hannah Bergman

PLoS One· December 2011

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