Publications by authors named "Brian Drawert"

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GillesPy2: A Biochemical Modeling Framework for Simulation Driven Biological Discovery.
Sean Matthew, Fin Carter, Joshua Cooper, Matthew Dippel, Ethan Green, Brian Drawert

Lett Biomath· January 2023

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Phylogenomics and historical biogeography of West Indian Rock Iguanas (genus Cyclura).
R Graham Reynolds, Aryeh H Miller, Stesha A Pasachnik, Charles R Knapp, Mark E Welch, Brian Drawert

Mol Phylogenet Evol· September 2022

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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Bilal Shaikh, Lucian P Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Brian Drawert

Nucleic Acids Res· July 2022

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Noise resistant synchronization and collective rhythm switching in a model of animal group locomotion.
Grant Navid Doering, Brian Drawert, Carmen Lee, Jonathan N Pruitt, Linda R Petzold

R Soc Open Sci· March 2022

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A positive feedback loop involving the Spa2 SHD domain contributes to focal polarization.
Michael J Lawson, Brian Drawert, Linda Petzold, Tau-Mu Yi

PLoS One· February 2022

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Saving the Devils Is in the Details: Tasmanian Devil Facial Tumor Disease Can Be Eliminated with Interventions.
Brian Drawert, Andrew S Flies, Sean Matthew, Megan Powell, Bryan Rumsey

Lett Biomath· February 2022

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Epidemiological modeling in StochSS Live!
Richard Jiang, Bruno Jacob, Matthew Geiger, Sean Matthew, Bryan Rumsey, Brian Drawert

Bioinformatics· September 2021

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Progressive arm muscle weakness in ALS follows the same sequence regardless of onset site: use of TOMS, a novel analytic method to track limb strength.
Nimish J Thakore, Brian J Drawert, Brittany R Lapin, Erik P Pioro

Amyotroph Lateral Scler Frontotemporal Degener· August 2021

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An arbitrary Lagrangian Eulerian smoothed particle hydrodynamics (ALE-SPH) method with a boundary volume fraction formulation for fluid-structure interaction.
Bruno Jacob, Brian Drawert, Tau-Mu Yi, Linda Petzold

Eng Anal Bound Elem· July 2021

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Coordinating cell polarization and morphogenesis through mechanical feedback.
Samhita P Banavar, Michael Trogdon, Brian Drawert, Tau-Mu Yi, Linda R Petzold

PLoS Comput Biol· January 2021

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Sources of intraspecific variation in the collective tempo and synchrony of ant societies.
Grant Navid Doering, Kirsten A Sheehy, James L L Lichtenstein, Brian Drawert, Linda R Petzold

Behav Ecol· August 2019

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Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method.
Brian Drawert, Bruno Jacob, Zhen Li, Tau-Mu Yi, Linda Petzold

Data Brief· February 2019

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A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems.
Drawert Brian, Jacob Bruno, Li Zhen, Yi Tau-Mu, Petzold Linda

J Comput Phys· February 2019

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The effect of cell geometry on polarization in budding yeast.
Michael Trogdon, Brian Drawert, Carlos Gomez, Samhita P Banavar, Tau-Mu Yi

PLoS Comput Biol· June 2018

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Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians.
Brian Drawert, Marc Griesemer, Linda R Petzold, Cheryl J Briggs

J R Soc Interface· August 2017

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Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist.
Brian Drawert, Andreas Hellander, Ben Bales, Debjani Banerjee, Giovanni Bellesia

PLoS Comput Biol· December 2016

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A framework for discrete stochastic simulation on 3D moving boundary domains.
Brian Drawert, Stefan Hellander, Michael Trogdon, Tau-Mu Yi, Linda Petzold

J Chem Phys· November 2016

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Macromolecular Crowding Regulates the Gene Expression Profile by Limiting Diffusion.
Mahdi Golkaram, Stefan Hellander, Brian Drawert, Linda R Petzold

PLoS Comput Biol· November 2016

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GillesPy: A Python Package for Stochastic Model Building and Simulation.
John H Abel, Brian Drawert, Andreas Hellander, Linda R Petzold

IEEE Life Sci Lett· September 2016

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MOLNs: A CLOUD PLATFORM FOR INTERACTIVE, REPRODUCIBLE, AND SCALABLE SPATIAL STOCHASTIC COMPUTATIONAL EXPERIMENTS IN SYSTEMS BIOLOGY USING PyURDME.
Brian Drawert, Michael Trogdon, Salman Toor, Linda Petzold, Andreas Hellander

SIAM J Sci Comput· June 2016

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Local error estimates for adaptive simulation of the Reaction-Diffusion Master Equation via operator splitting.
Andreas Hellander, Michael J Lawson, Brian Drawert, Linda Petzold

J Comput Phys· June 2014

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Spatial stochastic dynamics enable robust cell polarization.
Michael J Lawson, Brian Drawert, Mustafa Khammash, Linda Petzold, Tau-Mu Yi

PLoS Comput Biol· February 2014

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URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.
Brian Drawert, Stefan Engblom, Andreas Hellander

BMC Syst Biol· June 2012

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The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation.
Brian Drawert, Michael J Lawson, Linda Petzold, Mustafa Khammash

J Chem Phys· February 2010

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