Publications by authors named "Andreas Hellander"

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Contributions of cell behavior to geometric order in embryonic cartilage.
Sonja Mathias, Igor Adameyko, Andreas Hellander, Jochen Kursawe

PLoS Comput Biol· November 2023

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Convolutional Neural Networks as Summary Statistics for Approximate Bayesian Computation.
Mattias AKesson, Prashant Singh, Fredrik Wrede, Andreas Hellander

IEEE/ACM Trans Comput Biol Bioinform· April 2023

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Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation.
Adrien Coulier, Prashant Singh, Marc Sturrock, Andreas Hellander

PLoS Comput Biol· December 2022

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Altered developmental programs and oriented cell divisions lead to bulky bones during salamander limb regeneration.
Marketa Kaucka, Alberto Joven Araus, Marketa Tesarova, Joshua D Currie, Johan Boström, Andreas Hellander

Nat Commun· November 2022

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Surface flow for colonial integration in reef-building corals.
Thibault Bouderlique, Julian Petersen, Louis Faure, Daniel Abed-Navandi, Anass Bouchnita, Andreas Hellander

Curr Biol· June 2022

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Living in darkness: Exploring adaptation of Proteus anguinus in 3 dimensions by X-ray imaging.
Markéta Tesařová, Lucia Mancini, Edgardo Mauri, Gregor Aljančič, Magdalena Năpăruş-Aljančič, Andreas Hellander

Gigascience· April 2022

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Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods.
Richard Jiang, Prashant Singh, Fredrik Wrede, Andreas Hellander, Linda Petzold

PLoS Comput Biol· January 2022

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CBMOS: a GPU-enabled Python framework for the numerical study of center-based models.
Sonja Mathias, Adrien Coulier, Andreas Hellander

BMC Bioinformatics· January 2022

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Epidemiological modeling in StochSS Live!
Richard Jiang, Bruno Jacob, Matthew Geiger, Sean Matthew, Bryan Rumsey, Andreas Hellander

Bioinformatics· September 2021

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The machine learning life cycle and the cloud: implications for drug discovery.
Ola Spjuth, Jens Frid, Andreas Hellander

Expert Opin Drug Discov· September 2021

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Deep-learning models for lipid nanoparticle-based drug delivery.
Philip J Harrison, Håkan Wieslander, Alan Sabirsh, Johan Karlsson, Victor Malmsjö, Andreas Hellander

Nanomedicine (Lond)· June 2021

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Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators.
Richard M Jiang, Fredrik Wrede, Prashant Singh, Andreas Hellander, Linda R Petzold

BMC Bioinformatics· June 2021

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A multiscale compartment-based model of stochastic gene regulatory networks using hitting-time analysis.
Adrien Coulier, Stefan Hellander, Andreas Hellander

J Chem Phys· May 2021

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Scalable machine learning-assisted model exploration and inference using Sciope.
Prashant Singh, Fredrik Wrede, Andreas Hellander

Bioinformatics· April 2021

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Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit.
Ben Blamey, Salman Toor, Martin Dahlö, Håkan Wieslander, Philip J Harrison, Andreas Hellander

Gigascience· March 2021

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Impact of Force Function Formulations on the Numerical Simulation of Centre-Based Models.
Sonja Mathias, Adrien Coulier, Anass Bouchnita, Andreas Hellander

Bull Math Biol· October 2020

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A multiscale model to design therapeutic strategies that overcome drug resistance to tyrosine kinase inhibitors in multiple myeloma.
Anass Bouchnita, Vitaly Volpert, Mark J Koury, Andreas Hellander

Math Biosci· January 2020

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Hierarchical algorithm for the reaction-diffusion master equation.
Stefan Hellander, Andreas Hellander

J Chem Phys· January 2020

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Smart computational exploration of stochastic gene regulatory network models using human-in-the-loop semi-supervised learning.
Fredrik Wrede, Andreas Hellander

Bioinformatics· December 2019

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A 3D Multiscale Model to Explore the Role of EGFR Overexpression in Tumourigenesis.
Anass Bouchnita, Stefan Hellander, Andreas Hellander

Bull Math Biol· July 2019

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BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data.
Kristiina Ausmees, Aji John, Salman Z Toor, Andreas Hellander, Carl Nettelblad

BMC Bioinformatics· June 2018

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Mesoscopic-microscopic spatial stochastic simulation with automatic system partitioning.
Stefan Hellander, Andreas Hellander, Linda Petzold

J Chem Phys· December 2017

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Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage.
Marketa Kaucka, Tomas Zikmund, Marketa Tesarova, Daniel Gyllborg, Andreas Hellander

Elife· April 2017

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GillesPy: A Python Package for Stochastic Model Building and Simulation.
John H Abel, Brian Drawert, Andreas Hellander, Linda R Petzold

IEEE Life Sci Lett· September 2016

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MOLNs: A CLOUD PLATFORM FOR INTERACTIVE, REPRODUCIBLE, AND SCALABLE SPATIAL STOCHASTIC COMPUTATIONAL EXPERIMENTS IN SYSTEMS BIOLOGY USING PyURDME.
Brian Drawert, Michael Trogdon, Salman Toor, Linda Petzold, Andreas Hellander

SIAM J Sci Comput· June 2016

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