Publications by authors named "Brian Pratt"

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Connect Care Project, Bridging the Gap Between Acute and Post-Acute Care.
Housam Hegazy, Koh-Eun Narm, Brian Pratt, Tiffany Bell, James Mangano

J Gen Intern Med· July 2025

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METLIN-CCS: an ion mobility spectrometry collision cross section database.
Erin S Baker, Corey Hoang, Winnie Uritboonthai, Heino M Heyman, Brian Pratt

Nat Methods· December 2023

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Comment on "Ultrastructure reveals ancestral vertebrate pharyngeal skeleton in yunnanozoans".
Xi-Guang Zhang, Brian R Pratt

Science· July 2023

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Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions.
Kaylie I Kirkwood, Brian S Pratt, Nicholas Shulman, Kaipo Tamura, Michael J MacCoss

Nat Protoc· November 2022

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Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity.
Kaylie I Kirkwood, Michael W Christopher, Jefferey L Burgess, Sally R Littau, Kevin Foster, Brian S Pratt

J Proteome Res· January 2022

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Audit logs to enforce document integrity in Skyline and Panorama.
Tobias Rohde, Rita Chupalov, Nicholas Shulman, Vagisha Sharma, Josh Eckels, Brian S Pratt

Bioinformatics· August 2020

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Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics.
Kendra J Adams, Brian Pratt, Neelanjan Bose, Laura G Dubois, Lisa St John-Williams

J Proteome Res· April 2020

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LipidCreator workbench to probe the lipidomic landscape.
Bing Peng, Dominik Kopczynski, Brian S Pratt, Christer S Ejsing, Bo Burla

Nat Commun· April 2020

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Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping.
Christopher Ashwood, Brian Pratt, Brendan X MacLean, Rebekah L Gundry, Nicolle H Packer

Analyst· June 2019

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Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions.
Brendan X MacLean, Brian S Pratt, Jarrett D Egertson, Michael J MacCoss, Richard D Smith

J Am Soc Mass Spectrom· November 2018

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Impact of a Combination Antibiotic Bag on Compliance With Surviving Sepsis Campaign Goals in Emergency Department Patients With Severe Sepsis and Septic Shock.
Michael P Lorenzo, Lindsay MacConaghy, Christopher D Miller, Gregory Meola, Luke A Probst, Brian Pratt

Ann Pharmacother· March 2018

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Numerical compression schemes for proteomics mass spectrometry data.
Johan Teleman, Andrew W Dowsey, Faviel F Gonzalez-Galarza, Simon Perkins, Brian Pratt

Mol Cell Proteomics· June 2014

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The first stalk-eyed phosphatocopine crustacean from the Lower Cambrian of China.
Xi-Guang Zhang, Brian R Pratt

Curr Biol· November 2012

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A cross-platform toolkit for mass spectrometry and proteomics.
Matthew C Chambers, Brendan Maclean, Robert Burke, Dario Amodei, Daniel L Ruderman, Brian Pratt

Nat Biotechnol· October 2012

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The validity of multifrequency bioelectrical impedance measures to detect changes in the hydration status of wrestlers during acute dehydration and rehydration.
Alan C Utter, Steven R McAnulty, Bryan F Riha, Brian A Pratt, John M Grose

J Strength Cond Res· January 2012

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MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web Services.
Brian Pratt, J Jeffry Howbert, Natalie I Tasman, Erik J Nilsson

Bioinformatics· January 2012

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Molecular mechanism for adiponectin-dependent M2 macrophage polarization: link between the metabolic and innate immune activity of full-length adiponectin.
Palash Mandal, Brian T Pratt, Mark Barnes, Megan R McMullen, Laura E Nagy

J Biol Chem· April 2011

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Early growth response-1 attenuates liver injury and promotes hepatoprotection after carbon tetrachloride exposure in mice.
Michele T Pritchard, Jessica I Cohen, Sanjoy Roychowdhury, Brian T Pratt, Laura E Nagy

J Hepatol· October 2010

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Adiponectin and heme oxygenase-1 suppress TLR4/MyD88-independent signaling in rat Kupffer cells and in mice after chronic ethanol exposure.
Palash Mandal, Sanjoy Roychowdhury, Pil-Hoon Park, Brian T Pratt, Thierry Roger

J Immunol· October 2010

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Chronic alcohol exposure increases circulating bioactive oxidized phospholipids.
Lili Yang, Calivarathan Latchoumycandane, Megan R McMullen, Brian T Pratt, Renliang Zhang

J Biol Chem· July 2010

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The anti-inflammatory effects of adiponectin are mediated via a heme oxygenase-1-dependent pathway in rat Kupffer cells.
Palash Mandal, Pil-Hoon Park, Megan R McMullen, Brian T Pratt, Laura E Nagy

Hepatology· April 2010

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A guided tour of the Trans-Proteomic Pipeline.
Eric W Deutsch, Luis Mendoza, David Shteynberg, Terry Farrah, Henry Lam, Brian Pratt

Proteomics· March 2010

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Chronic ethanol-induced insulin resistance is associated with macrophage infiltration into adipose tissue and altered expression of adipocytokines.
Li Kang, Becky M Sebastian, Michele T Pritchard, Brian T Pratt, Stephen F Previs

Alcohol Clin Exp Res· September 2007

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Chronic ethanol and triglyceride turnover in white adipose tissue in rats: inhibition of the anti-lipolytic action of insulin after chronic ethanol contributes to increased triglyceride degradation.
Li Kang, Xiaocong Chen, Becky M Sebastian, Brian T Pratt, Ilya R Bederman

J Biol Chem· September 2007

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A common open representation of mass spectrometry data and its application to proteomics research.
Patrick G A Pedrioli, Jimmy K Eng, Robert Hubley, Mathijs Vogelzang, Eric W Deutsch, Brian Pratt

Nat Biotechnol· November 2004

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