Publications by authors named "Caird E Rexroad"

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Correction: Advancing genetic improvement in the omics era: status and priorities for United States aquaculture.
Linnea K Andersen, Neil F Thompson, Jason W Abernathy, Ridwan O Ahmed, Ali Ali, Caird E Rexroad

BMC Genomics· March 2025

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Advancing genetic improvement in the omics era: status and priorities for United States aquaculture.
Linnea K Andersen, Neil F Thompson, Jason W Abernathy, Ridwan O Ahmed, Ali Ali, Caird E Rexroad

BMC Genomics· February 2025

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The generation of the first chromosome-level de novo genome assembly and the development and validation of a 50K SNP array for the St. John River aquaculture strain of North American Atlantic salmon.
Guangtu Gao, Geoffrey C Waldbieser, Ramey C Youngblood, Dongyan Zhao, Michael R Pietrak, Caird E Rexroad

G3 (Bethesda)· August 2023

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A New Single Nucleotide Polymorphism Database for North American Atlantic Salmon Generated Through Whole Genome Resequencing.
Guangtu Gao, Michael R Pietrak, Gary S Burr, Caird E Rexroad, Brian C Peterson

Front Genet· February 2020

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A Vision for Development and Utilization of High-Throughput Phenotyping and Big Data Analytics in Livestock.
James E Koltes, John B Cole, Roxanne Clemmens, Ryan N Dilger, Luke M Kramer, Caird E Rexroad

Front Genet· December 2019

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Mapping and Expression of Candidate Genes for Development Rate in Rainbow Trout (Oncorhynchus mykiss).
Matthew C Hale, John A Colletti, Scott A Gahr, Julie Scardina, Frank P Thrower, Caird E Rexroad

J Hered· September 2017

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Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.
Daniel J Macqueen, Craig R Primmer, Ross D Houston, Barbara F Nowak, Louis Bernatchez, Caird E Rexroad

BMC Genomics· June 2017

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Detection and Validation of QTL Affecting Bacterial Cold Water Disease Resistance in Rainbow Trout Using Restriction-Site Associated DNA Sequencing.
Yniv Palti, Roger L Vallejo, Guangtu Gao, Sixin Liu, Alvaro G Hernandez, Caird E Rexroad

PLoS One· June 2016

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Transcriptome assembly, gene annotation and tissue gene expression atlas of the rainbow trout.
Mohamed Salem, Bam Paneru, Rafet Al-Tobasei, Fatima Abdouni, Gary H Thorgaard, Caird E Rexroad

PLoS One· February 2016

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Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients.
Roy G Danzmann, Andrea L Kocmarek, Joseph D Norman, Caird E Rexroad, Yniv Palti

BMC Genomics· January 2016

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Identification of single-nucleotide polymorphism markers associated with cortisol response to crowding in rainbow trout.
Sixin Liu, Roger L Vallejo, Guangtu Gao, Yniv Palti, Gregory M Weber, Caird E Rexroad

Mar Biotechnol (NY)· June 2015

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RNA-seq analysis of early hepatic response to handling and confinement stress in rainbow trout.
Sixin Liu, Guangtu Gao, Yniv Palti, Beth M Cleveland, Gregory M Weber, Caird E Rexroad

PLoS One· January 2015

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Characterization of the rainbow trout spleen transcriptome and identification of immune-related genes.
Ali Ali, Caird E Rexroad, Gary H Thorgaard, Jianbo Yao, Mohamed Salem

Front Genet· October 2014

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Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: identification of QTL on chromosome Omy19.
Gregory D Wiens, Roger L Vallejo, Timothy D Leeds, Yniv Palti, Sima Hadidi, Caird E Rexroad

PLoS One· June 2014

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Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum.
Roger L Vallejo, Yniv Palti, Sixin Liu, Jason P Evenhuis, Guangtu Gao, Caird E Rexroad

Mar Biotechnol (NY)· June 2014

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A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids.
Yniv Palti, Guangtu Gao, Michael R Miller, Roger L Vallejo, Paul A Wheeler, Caird E Rexroad

Mol Ecol Resour· May 2014

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Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection.
Caird E Rexroad, Roger L Vallejo, Sixin Liu, Yniv Palti, Gregory M Weber

Mar Biotechnol (NY)· October 2013

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Cloning and characterization of a novel oocyte-specific gene encoding an F-Box protein in rainbow trout (Oncorhynchus mykiss).
Lei Wang, Swamy K Tripurani, Warapond Wanna, Caird E Rexroad, Jianbo Yao

Reprod Biol Endocrinol· September 2013

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Molecular crosstalk between a chemical and a biological stressor and consequences on disease manifestation in rainbow trout.
Richard Burki, Aleksei Krasnov, Kathrin Bettge, Caird E Rexroad, Sergey Afanasyev

Aquat Toxicol· February 2013

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Characterization of the rainbow trout egg microRNA transcriptome.
Hao Ma, Mark Hostuttler, Hairong Wei, Caird E Rexroad, Jianbo Yao

PLoS One· January 2013

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QTL affecting stress response to crowding in a rainbow trout broodstock population.
Caird E Rexroad, Roger L Vallejo, Sixin Liu, Yniv Palti, Gregory M Weber

BMC Genet· November 2012

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Identification and expression of Smads associated with TGF-β/activin/nodal signaling pathways in the rainbow trout (Oncorhynchus mykiss).
Scott A Gahr, Gregory M Weber, Caird E Rexroad

Fish Physiol Biochem· October 2012

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Pathogenic infection confounds induction of the estrogenic biomarker vitellogenin in rainbow trout.
Richard Burki, Aleksei Krasnov, Kathrin Bettge, Caird E Rexroad, Sergej Afanasyev

Environ Toxicol Chem· October 2012

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RNA-Seq identifies SNP markers for growth traits in rainbow trout.
Mohamed Salem, Roger L Vallejo, Timothy D Leeds, Yniv Palti, Sixin Liu, Caird E Rexroad

PLoS One· September 2012

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Generation of a reference transcriptome for evaluating rainbow trout responses to various stressors.
Cecilia C Sánchez, Gregory M Weber, Guangtu Gao, Beth M Cleveland, Jianbo Yao, Caird E Rexroad

BMC Genomics· December 2011

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