Publications by authors named "Caleb D Phillips"

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Functionally enriched human polymorphisms associate to species in the chronic wound microbiome.
Rebecca A Gabrilska, Khalid Omeir, Jacob Ancira, Clint Miller, Craig D Tipton, Nicole Phillips, Caleb D Phillips

NPJ Biofilms Microbiomes· October 2025

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Impacts of host phylogeny, diet, and geography on the gut microbiome of rodents.
Sufia Akter Neha, John D Hanson, Jeremy E Wilkinson, Robert D Bradley, Caleb D Phillips

PLoS One· May 2025

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Functionally enriched human polymorphisms associate to species in the chronic wound microbiome.
Rebecca A Gabrilska, Khalid Omeir, Jacob Ancira, Clint Miller, Craig D Tipton, Nicole Phillips, Caleb D Phillips

medRxiv· January 2025

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The genome sequence of the endemic Mexican common mustached Bat, Pteronotus mexicanus. Miller, 1902 [Mormoopidae; Pteronotus].
Guillermo Sánchez-de la Vega, Jaime Gasca-Pineda, Anahí Martínez-Cárdenas, Sonja C Vernes, Emma C Teeling, Caleb D Phillips

Gene· December 2024

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A Metagenomics Pipeline to Characterize Self-Collected Vaginal Microbiome Samples.
Krystal Thomas-White, Evann E Hilt, Genevieve Olmschenk, Maryann Gong, Caleb D Phillips

Diagnostics (Basel)· September 2024

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The Microbiome of Osteoarthritic Hip and Knee Joints: A Prospective Multicenter Investigation.
Karan Goswami, Samuel Clarkson, Craig Tipton, Caleb D Phillips, Douglas A Dennis

J Bone Joint Surg Am· June 2023

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Molecular testing with next-generation sequencing appears to identify biofilm on penile prostheses better than traditional cultures: The new gold standard?
Paul H Chung, Joon Yau Leong, Jared J Wallen, Whitney Stanton, Niccole Diaz, Caleb D Phillips

Can J Urol· December 2022

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An Enhanced Understanding of Culture-Negative Periprosthetic Joint Infection with Next-Generation Sequencing: A Multicenter Study.
Karan Goswami, Samuel Clarkson, Caleb D Phillips, Douglas A Dennis, Brian A Klatt

J Bone Joint Surg Am· September 2022

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Diets Containing Egg or Whey Protein and Inulin Fiber Improve Energy Balance and Modulate Gut Microbiota in Exercising Obese Rats.
Bharath S Avirineni, Arashdeep Singh, Rizaldy C Zapata, Richard D Stevens, Caleb D Phillips

Mol Nutr Food Res· April 2022

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Microorganism Profiles of Penile Prosthesis Removed for Infection, Erosion, and Mechanical Malfunction Based on Next-Generation Sequencing.
Paul H Chung, Joon Yau Leong, Caleb D Phillips, Gerard D Henry

J Sex Med· February 2022

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Dietary whey and egg proteins interact with inulin fiber to modulate energy balance and gut microbiota in obese rats.
Bharath S Avirineni, Arashdeep Singh, Rizaldy C Zapata, Caleb D Phillips, Prasanth K Chelikani

J Nutr Biochem· January 2022

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Positive Selection and Gene Expression Analyses from Salivary Glands Reveal Discrete Adaptations within the Ecologically Diverse Bat Family Phyllostomidae.
Michael W Vandewege, Cibele G Sotero-Caio, Caleb D Phillips

Genome Biol Evol· August 2020

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Patient genetics is linked to chronic wound microbiome composition and healing.
Craig D Tipton, Randall D Wolcott, Nicholas E Sanford, Clint Miller, Gita Pathak, Nicole Phillips, Caleb D Phillips

PLoS Pathog· June 2020

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Chronic wound microbiome colonization on mouse model following cryogenic preservation.
Craig D Tipton, Nicholas E Sanford, Jake A Everett, Rebecca A Gabrilska, Randall D Wolcott, Caleb D Phillips

PLoS One· March 2020

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Differential Expression in Testis and Liver Transcriptomes from Four Species of Peromyscus (Rodentia: Cricetidae).
Laramie L Lindsey, Roy N Platt, Caleb D Phillips, David A Ray, Robert D Bradley

Genome Biol Evol· January 2020

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Metagenomic sequencing provides insights into microbial detoxification in the guts of small mammalian herbivores (Neotoma spp.).
Kevin D Kohl, Kelly F Oakeson, Teri J Orr, Aaron W Miller, Jennifer Sorensen Forbey, Caleb D Phillips

FEMS Microbiol Ecol· November 2018

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Microbiome Structural and Functional Interactions across Host Dietary Niche Space.
Caleb D Phillips, John Hanson, Jeremy E Wilkinson, Lawrence Koenig, Eric Rees

Integr Comp Biol· October 2017

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Elevated mitochondrial genome variation after 50 generations of radiation exposure in a wild rodent.
Robert J Baker, Benjamin Dickins, Jeffrey K Wickliffe, Faisal A A Khan, Sergey Gaschak, Caleb D Phillips

Evol Appl· September 2017

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Temporal dynamics of relative abundances and bacterial succession in chronic wound communities.
Craig D Tipton, Marilyn E Mathew, Richard A Wolcott, Randall D Wolcott, Tigga Kingston, Caleb D Phillips

Wound Repair Regen· August 2017

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Analysis of the Duodenal Microbiome in Autistic Individuals: Association With Carbohydrate Digestion.
Rafail I Kushak, Harland S Winter, Timothy M Buie, Stephen B Cox, Caleb D Phillips

J Pediatr Gastroenterol Nutr· May 2017

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Respiratory viral detection in the paranasal sinuses of patients with cystic fibrosis.
Nicholas R Rowan, Eric W Wang, Alyssa Kanaan, Nivedita Sahu, John V Williams, Caleb D Phillips

Am J Rhinol Allergy· March 2017

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Analysis of the chronic wound microbiota of 2,963 patients by 16S rDNA pyrosequencing.
Randall D Wolcott, John D Hanson, Eric J Rees, Lawrence D Koenig, Caleb D Phillips

Wound Repair Regen· January 2017

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Antibiotic Treatment Induces Long-lasting Changes in the Fecal Microbiota that Protect Against Colitis.
Naomi L Ward, Caleb D Phillips, Deanna D Nguyen, Nanda Kumar N Shanmugam, Yan Song

Inflamm Bowel Dis· October 2016

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The role of viruses in the clinical presentation of chronic rhinosinusitis.
Nicholas R Rowan, Stella Lee, Nivedita Sahu, Alyssa Kanaan, Stephen Cox, Caleb D Phillips

Am J Rhinol Allergy· September 2016

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Human-modified habitats change patterns of population genetic structure and group relatedness in Peter's tent-roosting bats.
Maria Sagot, Caleb D Phillips, Robert J Baker, Richard D Stevens

Ecol Evol· September 2016

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