Publications by authors named "David A Ray"

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Bat genomes illuminate adaptations to viral tolerance and disease resistance.
Ariadna E Morales, Yue Dong, Thomas Brown, Kaushal Baid, Dimitrios -Georgios Kontopoulos, David A Ray

Nature· February 2025

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Novel Sex-Specific Genes and Diverse Interspecific Expression in the Antennal Transcriptomes of Ithomiine Butterflies.
Francesco Cicconardi, Billy J Morris, Jacopo Martelossi, David A Ray, Stephen H Montgomery

Genome Biol Evol· October 2024

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Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements.
Morgan E Wirthlin, Tobias A Schmid, Julie E Elie, Xiaomeng Zhang, Amanda Kowalczyk, David A Ray

Science· March 2024

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The evolution of antimicrobial peptides in Chiroptera.
Francisco X Castellanos, Diana Moreno-Santillán, Graham M Hughes, Nicole S Paulat, Nicolette Sipperly, David A Ray

Front Immunol· November 2023

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Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia.
Nicole S Paulat, Jessica M Storer, Diana D Moreno-Santillán, Austin B Osmanski, Kevin A M Sullivan, David A Ray

Mol Biol Evol· May 2023

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Insights into mammalian TE diversity through the curation of 248 genome assemblies.
Austin B Osmanski, Nicole S Paulat, Jenny Korstian, Jenna R Grimshaw, Michaela Halsey, David A Ray

Science· April 2023

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Evolutionary constraint and innovation across hundreds of placental mammals.
Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, David A Ray

Science· April 2023

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A high-quality Ixodes scapularis genome advances tick science.
Sandip De, Sarah B Kingan, Chrysoula Kitsou, Daniel M Portik, Shelby D Foor, David A Ray

Nat Genet· February 2023

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Paramutation-like Epigenetic Conversion by piRNA at the Telomere of .
Ana P Dorador, Martina Dalikova, Stefan Cerbin, Chris M Stillman, Molly G Zych, David A Ray

Biology (Basel)· October 2022

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Comparison of genetic variation between rare and common congeners of Dipodomys with estimates of contemporary and historical effective population size.
Michaela K Halsey, John D Stuhler, Natalia J Bayona-Vásquez, Roy N Platt, Jim R Goetze, David A Ray

PLoS One· September 2022

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Transposable Elements in Bats Show Differential Accumulation Patterns Determined by Class and Functionality.
Nicole S Paulat, Erin McGuire, Krishnamurthy Subramanian, Austin B Osmanski, Diana D Moreno-Santillán, David A Ray

Life (Basel)· August 2022

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The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements.
Michael W Vandewege, Roy N Patt, Dana K Merriman, David A Ray, Federico G Hoffmann

RNA· April 2022

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Contradictory Phylogenetic Signals in the Laurasiatheria Anomaly Zone.
Liliya Doronina, Graham M Hughes, Diana Moreno-Santillan, Colleen Lawless, Tadhg Lonergan, David A Ray

Genes (Basel)· April 2022

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SINE-Based Phylogenomics Reveal Extensive Introgression and Incomplete Lineage Sorting in .
Jennifer M Korstian, Nicole S Paulat, Roy N Platt, Richard D Stevens, David A Ray

Genes (Basel)· February 2022

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Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats.
Diana D Moreno Santillán, Tanya M Lama, Yocelyn T Gutierrez Guerrero, Alexis M Brown, Paul Donat, David A Ray

Mol Ecol· December 2021

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Evolutionary history of the vertebrate Piwi gene family.
Javier Gutierrez, Roy Platt, Juan C Opazo, David A Ray, Federico Hoffmann

PeerJ· November 2021

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Editorial for the special issue on Mobile DNA 2019: 25 Years of discussion and research.
David A Ray, Victoria P Belancio

Anal Biochem· October 2020

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Identification and characterization of microRNAs (miRNAs) and their transposable element origins in the saltwater crocodile, Crocodylus porosus.
Arnab Ghosh, Roy N Platt, Michael W Vandewege, Rabia Tabassum, Chuan-Yu Hsu, David A Ray

Anal Biochem· August 2020

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Six reference-quality genomes reveal evolution of bat adaptations.
David Jebb, Zixia Huang, Martin Pippel, Graham M Hughes, Ksenia Lavrichenko, Lucy Burkitt-Gray, David A Ray

Nature· July 2020

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A High-Quality Genome Assembly of the North American Song Sparrow, .
Swarnali Louha, David A Ray, Kevin Winker, Travis C Glenn

G3 (Bethesda)· April 2020

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A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae.
Arnab Ghosh, Matthew G Johnson, Austin B Osmanski, Swarnali Louha, Natalia J Bayona-Vásquez, David A Ray

Genome Biol Evol· January 2020

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Differential Expression in Testis and Liver Transcriptomes from Four Species of Peromyscus (Rodentia: Cricetidae).
Laramie L Lindsey, Roy N Platt, Caleb D Phillips, David A Ray, Robert D Bradley

Genome Biol Evol· January 2020

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The 2019 FASEB Science Research Conference on The Mobile DNA Conference: 25 Years of Discussion and Research, June 23-28, Palm Springs, California, USA.
David A Ray, Nicole Paulat, Wenfeng An, Stephane Boissinot, Richard Cordaux

FASEB J· November 2019

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Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths.
David A Ray, Jenna R Grimshaw, Michaela K Halsey, Jennifer M Korstian, Austin B Osmanski

Genome Biol Evol· August 2019

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True Homoplasy of Retrotransposon Insertions in Primates.
Liliya Doronina, Olga Reising, Hiram Clawson, David A Ray, Jürgen Schmitz

Syst Biol· May 2019

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