Publications by authors named "Carol Rohl"

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A quantitative atlas of polyadenylation in five mammals.
Adnan Derti, Philip Garrett-Engele, Kenzie D Macisaac, Richard C Stevens, Shreedharan Sriram, Carol A Rohl

Genome Res· June 2012

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Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.
Tomas Babak, Philip Garrett-Engele, Christopher D Armour, Christopher K Raymond, Mark P Keller, Carol A Rohl

BMC Genomics· August 2010

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Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification.
John C Castle, Christopher D Armour, Martin Löwer, David Haynor, Matthew Biery, Carol A Rohl

PLoS One· July 2010

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DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing.
John C Castle, Matthew Biery, Heather Bouzek, Tao Xie, Ronghua Chen, Carol A Rohl

BMC Genomics· April 2010

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Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.
Christopher D Armour, John C Castle, Ronghua Chen, Tomas Babak, Patrick Loerch, Carol A Rohl

Nat Methods· September 2009

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Knowledge based identification of essential signaling from genome-scale siRNA experiments.
Armand Bankhead, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Carol Rohl

BMC Syst Biol· August 2009

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Pokefind: a novel topological filter for use with protein structure prediction.
Firas Khatib, Carol A Rohl, Kevin Karplus

Bioinformatics· June 2009

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Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.
Xinwei She, Carol A Rohl, John C Castle, Amit V Kulkarni, Jason M Johnson

BMC Genomics· June 2009

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Mapping the genetic architecture of gene expression in human liver.
Eric E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Carol A Rohl

PLoS Biol· May 2008

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Cataloging the relationships between proteins: a review of interaction databases.
Carol Rohl, Yancey Price, Tiffany B Fischer, Melissa Paczkowski, Michael F Zettel

Mol Biotechnol· September 2006

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Rapid knot detection and application to protein structure prediction.
Firas Khatib, Matthew T Weirauch, Carol A Rohl

Bioinformatics· July 2006

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Prediction of CASP6 structures using automated Robetta protocols.
Dylan Chivian, David E Kim, Lars Malmström, Jack Schonbrun, Carol A Rohl

Proteins· May 2006

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Physically realistic homology models built with ROSETTA can be more accurate than their templates.
Kira M S Misura, Dylan Chivian, Carol A Rohl, David E Kim, David Baker

Proc Natl Acad Sci U S A· April 2006

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Protein structure estimation from minimal restraints using Rosetta.
Carol A Rohl

Methods Enzymol· June 2005

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Protein structure prediction using Rosetta.
Carol A Rohl, Charlie E M Strauss, Kira M S Misura, David Baker

Methods Enzymol· May 2004

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Modeling structurally variable regions in homologous proteins with rosetta.
Carol A Rohl, Charlie E M Strauss, Dylan Chivian, David Baker

Proteins· May 2004

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Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.
Philip Bradley, Dylan Chivian, Jens Meiler, Kira M S Misura, Carol A Rohl

Proteins· January 2004

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Automated prediction of CASP-5 structures using the Robetta server.
Dylan Chivian, David E Kim, Lars Malmström, Philip Bradley, Timothy Robertson, Carol A Rohl

Proteins· January 2004

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An improved protein decoy set for testing energy functions for protein structure prediction.
Jerry Tsai, Richard Bonneau, Alexandre V Morozov, Brian Kuhlman, Carol A Rohl

Proteins· October 2003

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Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.
Jeffrey J Gray, Stewart Moughon, Chu Wang, Ora Schueler-Furman, Brian Kuhlman, Carol A Rohl

J Mol Biol· August 2003

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Circular dichroism spectra of short, fixed-nucleus alanine helices.
Der-Hang Chin, Robert W Woody, Carol A Rohl, Robert L Baldwin

Proc Natl Acad Sci U S A· November 2002

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De novo prediction of three-dimensional structures for major protein families.
Richard Bonneau, Charlie E M Strauss, Carol A Rohl, Dylan Chivian, Phillip Bradley

J Mol Biol· September 2002

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De novo determination of protein backbone structure from residual dipolar couplings using Rosetta.
Carol A Rohl, David Baker

J Am Chem Soc· March 2002

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Exact solutions for chemical bond orientations from residual dipolar couplings.
William J Wedemeyer, Carol A Rohl, Harold A Scherag

J Biomol NMR· February 2002

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