Publications by authors named "Carol Soderlund"

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Asian Citrus Psyllid Expression Profiles Suggest Candidatus Liberibacter Asiaticus-Mediated Alteration of Adult Nutrition and Metabolism, and of Nymphal Development and Immunity.
Meenal Vyas, Tonja W Fisher, Ruifeng He, William Nelson, Guohua Yin, Carol A Soderlund

PLoS One· April 2016

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Allele Workbench: transcriptome pipeline and interactive graphics for allele-specific expression.
Carol A Soderlund, William M Nelson, Stephen A Goff

PLoS One· September 2015

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Assessing fungal community structure from mineral surfaces in Kartchner Caverns using multiplexed 454 pyrosequencing.
Michael Joe Vaughan, Will Nelson, Carol Soderlund, Raina M Maier, Barry M Pryor

Microb Ecol· July 2015

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Comparative proteomic analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale and different monocot species.
Fernanda Salvato, Tiago S Balbuena, William Nelson, R Shyama Prasad Rao, Ruifeng He, Carol A Soderlund

J Proteome Res· April 2015

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Comparison of potato and asian citrus psyllid adult and nymph transcriptomes identified vector transcripts with potential involvement in circulative, propagative liberibacter transmission.
Tonja W Fisher, Meenal Vyas, Ruifeng He, William Nelson, Joseph M Cicero, Carol A Soderlund

Pathogens· November 2014

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TCW: transcriptome computational workbench.
Carol Soderlund, William Nelson, Mark Willer, David R Gang

PLoS One· March 2014

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Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave.
Marianyoly Ortiz, Antje Legatzki, Julia W Neilson, Brandon Fryslie, William M Nelson, Carol A Soderlund

ISME J· February 2014

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A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement.
Ruifeng He, Fernanda Salvato, Jeong-Jin Park, Min-Jeong Kim, William Nelson, Carol A Soderlund

BMC Plant Biol· February 2014

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Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement.
Rajeev K Varshney, Chi Song, Rachit K Saxena, Sarwar Azam, Sheng Yu, Carol Soderlund

Nat Biotechnol· March 2013

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Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Marianyoly Ortiz, Julia W Neilson, William M Nelson, Antje Legatzki, Andrea Byrne, Carol A Soderlund

Microb Ecol· February 2013

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Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
Hyun Jo Koo, Eric T McDowell, Xiaoqiang Ma, Kevin A Greer, Jeremy Kapteyn, Carol A Soderlund

BMC Plant Biol· February 2013

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An elm EST database for identifying leaf beetle egg-induced defense genes.
Kerstin Büchel, Eric McDowell, Will Nelson, Anne Descour, Jonathan Gershenzon, Carol Soderlund

BMC Genomics· June 2012

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Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.
Julia W Neilson, Jay Quade, Marianyoly Ortiz, William M Nelson, Antje Legatzki, Carol A Soderlund

Extremophiles· May 2012

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MGOS: development of a community annotation database for Magnaporthe oryzae.
Anupreet Kour, Kevin Greer, Barbara Valent, Marc J Orbach, Carol Soderlund

Mol Plant Microbe Interact· March 2012

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Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity.
Ruifeng He, Min-Jeong Kim, William Nelson, Tiago S Balbuena, Ryan Kim, Carol A Soderlund

Am J Bot· February 2012

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SyMAP v3.4: a turnkey synteny system with application to plant genomes.
Carol Soderlund, Matthew Bomhoff, William M Nelson

Nucleic Acids Res· May 2011

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Comparative functional genomic analysis of Solanum glandular trichome types.
Eric T McDowell, Jeremy Kapteyn, Adam Schmidt, Chao Li, Jin-Ho Kang, Carol A Soderlund

Plant Physiol· January 2011

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Computational techniques for elucidating plant-pathogen interactions from large-scale experiments on fungi and oomycetes.
Carol Soderlund

Brief Bioinform· November 2009

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Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Carol Soderlund, Anne Descour, Dave Kudrna, Matthew Bomhoff, Lomax Boyd

PLoS Genet· November 2009

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The B73 maize genome: complexity, diversity, and dynamics.
Patrick S Schnable, Doreen Ware, Robert S Fulton, Joshua C Stein, Fusheng Wei, Carol Soderlund

Science· November 2009

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A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.
Yong Q Gu, Yaqin Ma, Naxin Huo, John P Vogel, Frank M You, Carol Soderlund

BMC Genomics· October 2009

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PAVE: program for assembling and viewing ESTs.
Carol Soderlund, Eric Johnson, Matthew Bomhoff, Anne Descour

BMC Genomics· August 2009

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Integrating sequence with FPC fingerprint maps.
William Nelson, Carol Soderlund

Nucleic Acids Res· April 2009

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Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.
William Nelson, Meizhong Luo, Jianxin Ma, Matt Estep, James Estill, Carol Soderlund

BMC Genomics· December 2008

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Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
HyeRan Kim, Bonnie Hurwitz, Yeisoo Yu, Kristi Collura, Navdeep Gill, Carol Soderlund

Genome Biol· May 2008

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