Publications by authors named "Matthew Bomhoff"

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Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems.
Kai L Blumberg, Alise J Ponsero, Matthew Bomhoff, Elisha M Wood-Charlson, Edward F DeLong

Front Microbiol· December 2021

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Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data.
Alise J Ponsero, Matthew Bomhoff, Kai Blumberg, Ken Youens-Clark, Nina M Herz

Nucleic Acids Res· January 2021

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fRNAkenseq: a fully powered-by-CyVerse cloud integrated RNA-sequencing analysis tool.
Allen Hubbard, Matthew Bomhoff, Carl J Schmidt

PeerJ· May 2020

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Libra: scalable k-mer-based tool for massive all-vs-all metagenome comparisons.
Illyoung Choi, Alise J Ponsero, Matthew Bomhoff, Ken Youens-Clark, John H Hartman

Gigascience· February 2019

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CoGe LoadExp+: A web-based suite that integrates next-generation sequencing data analysis workflows and visualization.
Jeffrey W Grover, Matthew Bomhoff, Sean Davey, Brian D Gregory, Rebecca A Mosher

Plant Direct· July 2017

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FractBias: a graphical tool for assessing fractionation bias following polyploidy.
Blake L Joyce, Asher Haug-Baltzell, Sean Davey, Matthew Bomhoff, James C Schnable

Bioinformatics· February 2017

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SynFind: Compiling Syntenic Regions across Any Set of Genomes on Demand.
Haibao Tang, Matthew D Bomhoff, Evan Briones, Liangsheng Zhang, James C Schnable

Genome Biol Evol· November 2015

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Genome-wide patterns of differentiation among house mouse subspecies.
Megan Phifer-Rixey, Matthew Bomhoff, Michael W Nachman

Genetics· September 2014

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SyMAP v3.4: a turnkey synteny system with application to plant genomes.
Carol Soderlund, Matthew Bomhoff, William M Nelson

Nucleic Acids Res· May 2011

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Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Carol Soderlund, Anne Descour, Dave Kudrna, Matthew Bomhoff, Lomax Boyd

PLoS Genet· November 2009

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PAVE: program for assembling and viewing ESTs.
Carol Soderlund, Eric Johnson, Matthew Bomhoff, Anne Descour

BMC Genomics· August 2009

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