Publications by authors named "Sean Davey"

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CyVerse: Cyberinfrastructure for open science.
Tyson L Swetnam, Parker B Antin, Ryan Bartelme, Alexander Bucksch, David Camhy, Robert Davey, Sean Davey

PLoS Comput Biol· February 2024

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dadi-cli: Automated and distributed population genetic model inference from allele frequency spectra.
Xin Huang, Travis J Struck, Sean W Davey, Ryan N Gutenkunst

bioRxiv· June 2023

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PhytoOracle: Scalable, modular phenomics data processing pipelines.
Emmanuel M Gonzalez, Ariyan Zarei, Nathanial Hendler, Travis Simmons, Arman Zarei, Sean Davey

Front Plant Sci· March 2023

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Fourth Report on Chicken Genes and Chromosomes 2022.
Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Sean Davey

Cytogenet Genome Res· January 2023

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Chickspress: a resource for chicken gene expression.
Fiona M McCarthy, Ken Pendarvis, Amanda M Cooksey, Cathy R Gresham, Matt Bomhoff, Sean Davey

Database (Oxford)· January 2019

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EPIC-CoGe: managing and analyzing genomic data.
Andrew D L Nelson, Asher K Haug-Baltzell, Sean Davey, Brian D Gregory, Eric Lyons

Bioinformatics· August 2018

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SynMap2 and SynMap3D: web-based whole-genome synteny browsers.
Asher Haug-Baltzell, Sean A Stephens, Sean Davey, Carlos E Scheidegger, Eric Lyons

Bioinformatics· July 2017

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CoGe LoadExp+: A web-based suite that integrates next-generation sequencing data analysis workflows and visualization.
Jeffrey W Grover, Matthew Bomhoff, Sean Davey, Brian D Gregory, Rebecca A Mosher

Plant Direct· July 2017

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FractBias: a graphical tool for assessing fractionation bias following polyploidy.
Blake L Joyce, Asher Haug-Baltzell, Sean Davey, Matthew Bomhoff, James C Schnable

Bioinformatics· February 2017

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GEISHA: an evolving gene expression resource for the chicken embryo.
Parker B Antin, Tatiana A Yatskievych, Sean Davey, Diana K Darnell

Nucleic Acids Res· January 2014

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BioNetBuilder2.0: bringing systems biology to chicken and other model organisms.
Jay H Konieczka, Kevin Drew, Alex Pine, Kevin Belasco, Sean Davey

BMC Genomics· July 2009

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P-Mod: an algorithm and software to map modifications to peptide sequences using tandem MS data.
Beau T Hansen, Sean W Davey, Amy-Joan L Ham, Daniel C Liebler

J Proteome Res· July 2005

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Peptide sequence motif analysis of tandem MS data with the SALSA algorithm.
Daniel C Liebler, Beau T Hansen, Sean W Davey, Laura Tiscareno, Daniel E Mason

Anal Chem· January 2002

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