Publications by authors named "Catherine Snopkowski"

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Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets.
Jasmine T Plummer, Felipe Segato Dezem, David P Cook, Jiwoon Park, Luke Zhang, Catherine Snopkowski

Nat Biotechnol· December 2025

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Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis.
José Reyes, Isabella Del Priore, Andrea C Chaikovsky, Nikhita Pasnuri, Ahmed M Elhossiny, Catherine Snopkowski

bioRxiv· June 2025

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The covariance environment defines cellular niches for spatial inference.
Doron Haviv, Ján Remšík, Mohamed Gatie, Catherine Snopkowski, Meril Takizawa

Nat Biotechnol· February 2025

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Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing.
Tsion Abay, Robert R Stickels, Meril T Takizawa, Benan N Nalbant, Yu-Hsin Hsieh, Catherine Snopkowski

Nat Genet· February 2025

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A universal urinary cell gene signature of acute rejection in kidney allografts.
Thalia Salinas, Carol Li, Catherine Snopkowski, Vijay K Sharma, Darshana M Dadhania

J Immunol Methods· September 2024

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Transcript-specific enrichment enables profiling rare cell states via scRNA-seq.
Tsion Abay, Robert R Stickels, Meril T Takizawa, Benan N Nalbant, Yu-Hsin Hsieh, Catherine Snopkowski

bioRxiv· March 2024

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Urinary Cell Gene Signature of Acute Rejection in Kidney Allografts.
Thalia Salinas, Carol Li, Catherine Snopkowski, Vijay K Sharma, Darshana M Dadhania

medRxiv· December 2023

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Urinary cell mRNA profiling distinguishes disease activity in antineutrophil cytoplasmic antibody-associated glomerulonephritis.
Lillian Xu, Sam Kant, Faten Aqeel, Brendan Antiochos, Carol Li, Catherine Snopkowski

J Nephrol· May 2023

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Urinary cell mRNA profiling of kidney allograft recipients: Development of a portable protocol for noninvasive diagnosis of T cell mediated rejection and BK virus nephropathy.
Thalia Salinas, Carol Li, Catherine Snopkowski, Gabriel Stryjniak, Divya Shankaranarayanan

J Immunol Methods· January 2023

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Development of a Bak gene based standard curve for absolute quantification of BK virus in real time quantitative PCR assay and noninvasive diagnosis of BK virus nephropathy in kidney allograft recipients.
Carol Li, Clayton Hughes, Ruchuang Ding, Catherine Snopkowski, Thalia Salinas

J Immunol Methods· October 2022

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Detection of infiltrating fibroblasts by single-cell transcriptomics in human kidney allografts.
Hemant Suryawanshi, Hua Yang, Michelle Lubetzky, Pavel Morozov, Mila Lagman, Catherine Snopkowski

PLoS One· June 2022

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Urinary cell mRNA profiling of kidney allograft recipients: A systematic investigation of a filtration based protocol for the simplification of urine processing.
Catherine Snopkowski, Thalia Salinas, Carol Li, Gabriel Stryjniak, Ruchuang Ding

J Immunol Methods· November 2021

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Deep sequencing of DNA from urine of kidney allograft recipients to estimate donor/recipient-specific DNA fractions.
Aziz Belkadi, Gaurav Thareja, Darshana Dadhania, John R Lee, Thangamani Muthukumar, Catherine Snopkowski

PLoS One· September 2021

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Validation of a noninvasive prognostic signature for allograft failure following BK virus associated nephropathy.
Essa Abuhelaiqa, Catherine Snopkowski, Carol Li, Steve Salvatore, John R Lee

Clin Transplant· February 2021

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Urinary cell transcriptomics and acute rejection in human kidney allografts.
Akanksha Verma, Thangamani Muthukumar, Hua Yang, Michelle Lubetzky, Michael F Cassidy, Catherine Snopkowski

JCI Insight· February 2020

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Urinary cell mRNA profiles and differential diagnosis of acute kidney graft dysfunction.
Marie Matignon, Ruchuang Ding, Darshana M Dadhania, Franco B Mueller, Choli Hartono, Catherine Snopkowski

J Am Soc Nephrol· July 2014

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Noninvasive prognostication of polyomavirus BK virus-associated nephropathy.
Darshana Dadhania, Catherine Snopkowski, Thangamani Muthukumar, John Lee, Ruchuang Ding

Transplantation· July 2013

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Urinary cell levels of mRNA for OX40, OX40L, PD-1, PD-L1, or PD-L2 and acute rejection of human renal allografts.
Cheguevara Afaneh, Thangamani Muthukumar, Michelle Lubetzky, Ruchuang Ding, Catherine Snopkowski

Transplantation· December 2010

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Validation of noninvasive diagnosis of BK virus nephropathy and identification of prognostic biomarkers.
Darshana Dadhania, Catherine Snopkowski, Ruchuang Ding, Thangamani Muthukumar, Jun Lee

Transplantation· July 2010

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MicroRNA expression profiles predictive of human renal allograft status.
Dany Anglicheau, Vijay K Sharma, Ruchuang Ding, Aurélie Hummel, Catherine Snopkowski

Proc Natl Acad Sci U S A· March 2009

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Epidemiology of BK virus in renal allograft recipients: independent risk factors for BK virus replication.
Darshana Dadhania, Catherine Snopkowski, Ruchuang Ding, Thangamani Muthukumar, Christina Chang

Transplantation· August 2008

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Messenger RNA for FOXP3 in the urine of renal-allograft recipients.
Thangamani Muthukumar, Darshana Dadhania, Ruchuang Ding, Catherine Snopkowski, Rubina Naqvi

N Engl J Med· December 2005

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