Publications by authors named "ChengPin Shen"

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OpenSpec Enables Detecting Unexpected Modifications from Proteomics Data Generated by Orbitrap Astral Mass Spectrometer.
Min Tang, Zhao Sun, Chengpin Shen, Xiaoqing Wang, Xinhang Hou

Anal Chem· November 2025

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Multidimensional Proteomic Landscape Reveals Distinct Activated Pathways Between Human Brain Tumors.
Shuang Yang, Yongtao Zheng, Chengbin Zhou, Jun Yao, Guoquan Yan, Chengpin Shen, Huali Shen

Adv Sci (Weinh)· February 2025

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Deep Learning Powers Protein Identification from Precursor MS Information.
Yameng Dai, Yi Yang, Enhui Wu, Chengpin Shen, Liang Qiao

J Proteome Res· September 2024

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Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics.
Enhui Wu, Vijini Mallawaarachchi, Jinzhi Zhao, Yi Yang, Hebin Liu, Chengpin Shen

Microbiome· March 2024

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High-Abundance Protein-Guided Hybrid Spectral Library for Data-Independent Acquisition Metaproteomics.
Enhui Wu, Yi Yang, Jinzhi Zhao, Jianxujie Zheng, Xiaoqing Wang, Chengpin Shen

Anal Chem· January 2024

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Metaproteomics profiling of the microbial communities in fermentation starters () during multi-round production of Chinese liquor.
Jinzhi Zhao, Yi Yang, Mengjing Teng, Jianxujie Zheng, Bing Wang, Chengpin Shen

Front Nutr· June 2023

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Comprehensive Evaluation and Optimization of the Data-Dependent LC-MS/MS Workflow for Deep Proteome Profiling.
Min Tang, Peiwu Huang, Lize Wu, Piyu Zhou, Pengyun Gong, Chengpin Shen

Anal Chem· May 2023

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DeepFLR facilitates false localization rate control in phosphoproteomics.
Yu Zong, Yuxin Wang, Yi Yang, Dan Zhao, Xiaoqing Wang, Chengpin Shen

Nat Commun· April 2023

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Data-independent acquisition boosts quantitative metaproteomics for deep characterization of gut microbiota.
Jinzhi Zhao, Yi Yang, Hua Xu, Jianxujie Zheng, Chengpin Shen

NPJ Biofilms Microbiomes· January 2023

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Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters.
Jinzhi Zhao, Yi Yang, Liangqiang Chen, Jianxujie Zheng, Xibin Lv, Chengpin Shen

Front Microbiol· January 2023

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Photosynthesis of Acetate by -CdS Biohybrid System.
Ying He, Shurong Wang, Xinyue Han, Jiayuan Shen, Yanwei Lu, Chengpin Shen

ACS Appl Mater Interfaces· May 2022

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Multi-Omic Profiling of Multi-Biosamples Reveals the Role of Amino Acid and Nucleotide Metabolism in Endometrial Cancer.
Runqiu Yi, Liying Xie, Xiaoqing Wang, Chengpin Shen, Xiaojun Chen

Front Oncol· April 2022

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Direct MALDI-TOF profiling of gingival crevicular fluid sediments for periodontitis diagnosis.
Jia Yi, Yueqing Shen, Yi Yang, Chengpin Shen, Baohong Liu

Talanta· April 2021

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Mesoporous Silica as Sorbents and Enzymatic Nanoreactors for Microbial Membrane Proteomics.
Jinzhi Zhao, Ruijun Jian, Yuning Wang, Beibei Yang, Dan Zhao, Chengpin Shen

ACS Appl Mater Interfaces· March 2021

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Metaproteomics characterizes human gut microbiome function in colorectal cancer.
Shuping Long, Yi Yang, Chengpin Shen, Yiwen Wang, Anmei Deng

NPJ Biofilms Microbiomes· March 2020

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In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics.
Yi Yang, Xiaohui Liu, Chengpin Shen, Yu Lin, Pengyuan Yang

Nat Commun· January 2020

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[A method using spectrum alignment to improve analysis efficiency of liquid chromatography combined with mass spectrometry].
Wenyuan Lu, Yang Zhang, Chengpin Shen, Xuefei Yin, Xiaohui Liu

Se Pu· April 2014

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An iTRAQ based quantitative proteomic strategy to explore novel secreted proteins in metastatic hepatocellular carcinoma cell lines.
Yanyan Yu, Xiuwen Pan, Ying Ding, Xiaohui Liu, Hailin Tang, Chengpin Shen, Huali Shen

Analyst· August 2013

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Improved proteomic analysis pipeline for LC-ETD-MS/MS using charge enhancing methods.
Li-Qi Xie, Cheng-Pin Shen, Min-Bo Liu, Zhong-Da Chen, Ru-Yun Du

Mol Biosyst· October 2012

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Global profiling of proteolytically modified proteins in human metastatic hepatocellular carcinoma cell lines reveals CAPN2 centered network.
Chengpin Shen, Yanyan Yu, Hong Li, Guoquan Yan, Mingqi Liu, Huali Shen

Proteomics· June 2012

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Comparison of alternative extraction methods for secretome profiling in human hepatocellular carcinoma cells.
Jing Cao, ChengPin Shen, Jun Zhang, Jun Yao, HuaLi Shen

Sci China Life Sci· January 2011

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Novel proteomic strategy reveal combined alpha1 antitrypsin and cathepsin D as biomarkers for colorectal cancer early screening.
Li-Qi Xie, Chao Zhao, San-Jun Cai, Ye Xu, Li-Yong Huang, Jia-Shen Bian, Cheng-Pin Shen

J Proteome Res· September 2010

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A robust new strategy for high-molecular-weight proteome research: a 2-hydroxyethyl agarose/polyacrylamide gel enhanced separation and ZnO-PMMA nanobeads assisted identification.
Wenwen Shen, Chengpin Shen, Huanming Xiong, Haojie Lu, Pengyuan Yang

Talanta· September 2010

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Nanozeolite-driven approach for enrichment of secretory proteins in human hepatocellular carcinoma cells.
Jing Cao, Yuanyuan Hu, Chengpin Shen, Jun Yao, Liming Wei, Huali Shen

Proteomics· November 2009

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