Publications by authors named "Cheryl Baxter"

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CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation.
Massimiliano S Tagliamonte, Abhinav Sharma, Alberto Riva, Monika Moir, Marco Salemi, Cheryl Baxter

Bioinformatics· December 2025

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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage.
Dikeledi Kekana, Buhle Ntozini, Ryan Hisner, Mukhlid Yousif, Phindile Ntuli, Cheryl Baxter

Virus Evol· November 2025

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Identifying genomic surveillance gaps in Africa for the global public health response to West Nile virus: a systematic review.
Monika Moir, Nikita Sitharam, Laura Marije Hofstra, Graeme Dor, Gaspary Mwanyika, Cheryl Baxter

Lancet Microbe· October 2025

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A decade of dengue disease burden in Africa (2013-2023): a systematic review.
Gaspary O Mwanyika, Monika Moir, Abdualmoniem O Musa, Jenicca Poongavanan, Graeme Dor, Cheryl Baxter

Travel Med Infect Dis· October 2025

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Genomic diversity and surveillance of SARS-CoV-2 in Nigeria.
Thomas J Y Kono, Ezenwa J Onyemata, Natalia Blanco, Chika K Onwuamah, Nnaemeka Ndodo, Cheryl Baxter

BMC Genomics· October 2025

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Craft: a machine learning approach to dengue subtyping.
Daniel J van Zyl, Marcel Dunaiski, Houriiyah Tegally, Cheryl Baxter, Tulio de Oliveira

Bioinform Adv· October 2025

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Conserved recombination patterns across hepatitis B genotypes: a retrospective study.
Derek Tshiabuila, James E San, Eduan Wilkinson, Graeme Dor, Houriiyah Tegally, Cheryl Baxter

Virol J· July 2025

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Review of open-source software for developing heterogeneous data management systems for bioinformatics applications.
Danilo Silva, Monika Moir, Marcel Dunaiski, Natalia Blanco, Fati Murtala-Ibrahim, Cheryl Baxter

Bioinform Adv· July 2025

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Spatiotemporal disease suitability prediction for Oropouche virus and the role of vectors across the Americas.
Jenicca Poongavanan, Marcel Dunaiski, Graeme Dor, Moritz U G Kraemer, Marta Giovanetti, Cheryl Baxter

medRxiv· June 2025

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Genomic Surveillance of Climate-Amplified Cholera Outbreak, Malawi, 2022-2023.
Lucious Chabuka, Wonderful T Choga, Carla N Mavian, Monika Moir, Christian Morgenstern, Cheryl Baxter

Emerg Infect Dis· June 2025

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Tracing the spatial origins and spread of SARS-CoV-2 Omicron lineages in South Africa.
Graeme Dor, Eduan Wilkinson, Darren P Martin, Monika Moir, Derek Tshiabuila, Cheryl Baxter

Nat Commun· May 2025

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Alignment-free viral sequence classification at scale.
Daniel J van Zyl, Marcel Dunaiski, Houriiyah Tegally, Cheryl Baxter, Tulio de Oliveira

BMC Genomics· April 2025

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Genomic Characterization of Circulating Dengue Virus, Ethiopia, 2022-2023.
Adugna Abera, Houriiyah Tegally, Geremew Tasew, Eduan Wilkinson, Abraham Ali, Cheryl Baxter

Emerg Infect Dis· March 2025

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Craft: A Machine Learning Approach to Dengue Subtyping.
Daniel J van Zyl, Marcel Dunaiski, Houriiyah Tegally, Cheryl Baxter,

bioRxiv· February 2025

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Reflective Evaluation of Next-Generation Sequencing Data during Early Phase Detection of the Delta Variant.
Upasana Ramphal, Derek Tshiabuila, Yajna Ramphal, Jennifer Giandhari, Carel van Heerden, Cheryl Baxter

OBM Genet· January 2025

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Dengue virus importation risks in Africa: a modelling study.
Jenicca Poongavanan, José Lourenço, Joseph L-H Tsui, Vittoria Colizza, Yajna Ramphal, Cheryl Baxter

Lancet Planet Health· December 2024

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Alignment-Free Viral Sequence Classification at Scale.
Daniel J van Zyl, Marcel Dunaiski, Houriiyah Tegally, Cheryl Baxter,

bioRxiv· December 2024

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Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana.
Wonderful T Choga, Emanuele Gustani-Buss, Houriiyah Tegally, Dorcas Maruapula, Xiaoyu Yu, Cheryl Baxter

Virus Evol· November 2024

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An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable for Genomic Surveillance Within Clinical Diagnostic Settings.
Derek Tshiabuila, Wonderful Choga, James E San, Tongai Maponga, Gert Van Zyl, Cheryl Baxter

Int J Mol Sci· October 2024

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Assessing Dengue Virus Importation Risks in Africa: A Climate and Travel-Based Model.
Jenicca Poongavanan, José Lourenço, Joseph L-H Tsui, Vittoria Colizza, Yajna Ramphal, Cheryl Baxter

medRxiv· October 2024

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Dynamics and ecology of a multi-stage expansion of Oropouche virus in Brazil.
Houriiyah Tegally, Simon Dellicour, Jenicca Poongavanan, Carla Mavian, Graeme Dor, Cheryl Baxter

medRxiv· October 2024

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Evaluating diagnostic accuracy of an RT-PCR test for the detection of SARS-CoV-2 in saliva.
Natasha Samsunder, Aida Sivro, Razia Hassan-Moosa, Lara Lewis, Zahra Kara, Cheryl Baxter

Diagn Progn Res· July 2024

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Understanding the Transmission Dynamics of the Chikungunya Virus in Africa.
Yajna Ramphal, Houriiyah Tegally, James Emmanuel San, Martina Larissa Reichmuth, Marije Hofstra, Cheryl Baxter

Pathogens· July 2024

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SARS-CoV-2 Genomic Epidemiology Dashboards: A Review of Functionality and Technological Frameworks for the Public Health Response.
Nikita Sitharam, Houriiyah Tegally, Danilo de Castro Silva, Cheryl Baxter, Tulio de Oliveira

Genes (Basel)· July 2024

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HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ /lamivudine /dolutegravir (TLD) roll-out in Mozambique.
Nália Ismael, Hernane Gemusse, Isabel Mahumane, Osvaldo Laurindo, Cacildo Magul, Cheryl Baxter

BMC Infect Dis· July 2024

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