Publications by authors named "Chinh Tran-To Su"

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Epi4Ab: a data-driven prediction model of conformational epitopes for specific antibody VH/VL families and CDRs sequences.
Nhan Dinh Tran, Krithika Subramani, Chinh Tran-To Su

MAbs· December 2025

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epiTCR-KDA: knowledge distillation model on dihedral angles for TCR-peptide prediction.
My-Diem Nguyen Pham, Chinh Tran-To Su, Thanh-Nhan Nguyen, Hoai-Nghia Nguyen, Dinh Duy An Nguyen

Bioinform Adv· November 2024

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Targeting the GPI transamidase subunit GPAA1 abrogates the CD24 immune checkpoint in ovarian cancer.
Alok K Mishra, Tianyi Ye, Shahid Banday, Ritesh P Thakare, Chinh Tran-To Su, Sunil K Malonia

Cell Rep· April 2024

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Variable-heavy (VH) families influencing IgA1&2 engagement to the antigen, FcαRI and superantigen proteins G, A, and L.
Wei-Li Ling, Chinh Tran-To Su, Wai-Heng Lua, Joshua Yi Yeo, Jun-Jie Poh

Sci Rep· April 2022

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Molecular Insights of Nickel Binding to Therapeutic Antibodies as a Possible New Antibody Superantigen.
Chinh Tran-To Su, Wai-Heng Lua, Jun-Jie Poh, Wei-Li Ling, Joshua Yi Yeo

Front Immunol· October 2021

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Essentially Leading Antibody Production: An Investigation of Amino Acids, Myeloma, and Natural V-Region Signal Peptides in Producing Pertuzumab and Trastuzumab Variants.
Wei-Li Ling, Chinh Tran-To Su, Wai-Heng Lua, Jun-Jie Poh, Yuen-Ling Ng

Front Immunol· June 2021

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An Alternative HIV-1 Non-Nucleoside Reverse Transcriptase Inhibition Mechanism: Targeting the p51 Subunit.
Kwok-Fong Chan, Chinh Tran-To Su, Alexander Krah, Ser-Xian Phua, Joshua Yi Yeo

Molecules· December 2020

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Structural modelling of the lumenal domain of human GPAA1, the metallo-peptide synthetase subunit of the transamidase complex, reveals zinc-binding mode and two flaps surrounding the active site.
Chinh Tran-To Su, Swati Sinha, Birgit Eisenhaber, Frank Eisenhaber

Biol Direct· September 2020

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The Determination of HIV-1 RT Mutation Rate, Its Possible Allosteric Effects, and Its Implications on Drug Resistance.
Joshua Yi Yeo, Ghin-Ray Goh, Chinh Tran-To Su, Samuel Ken-En Gan

Viruses· March 2020

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Reviewing HIV-1 Gag Mutations in Protease Inhibitors Resistance: Insights for Possible Novel Gag Inhibitor Designs.
Chinh Tran-To Su, Darius Wen-Shuo Koh, Samuel Ken-En Gan

Molecules· September 2019

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Role of the IgE variable heavy chain in FcεRIα and superantigen binding in allergy and immunotherapy.
Wai-Heng Lua, Chinh Tran-To Su, Joshua Yi Yeo, Jun-Jie Poh, Wei-Li Ling

J Allergy Clin Immunol· August 2019

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Perspective: The promises of a holistic view of proteins-impact on antibody engineering and drug discovery.
Ser-Xian Phua, Kwok-Fong Chan, Chinh Tran-To Su, Jun-Jie Poh, Samuel Ken-En Gan

Biosci Rep· January 2019

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Modeling the full length HIV-1 Gag polyprotein reveals the role of its p6 subunit in viral maturation and the effect of non-cleavage site mutations in protease drug resistance.
Chinh Tran-To Su, Chee-Keong Kwoh, Chandra Shekhar Verma, Samuel Ken-En Gan

J Biomol Struct Dyn· December 2018

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Allosteric Effects between the Antibody Constant and Variable Regions: A Study of IgA Fc Mutations on Antigen Binding.
Chinh Tran-To Su, Wai-Heng Lua, Wei-Li Ling, Samuel Ken-En Gan

Antibodies (Basel)· June 2018

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A computational study for rational HIV-1 non-nucleoside reverse transcriptase inhibitor selection and the discovery of novel allosteric pockets for inhibitor design.
Ron Zhi-Hui Chiang, Samuel Ken-En Gan, Chinh Tran-To Su

Biosci Rep· April 2018

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The role of Antibody Vκ Framework 3 region towards Antigen binding: Effects on recombinant production and Protein L binding.
Chinh Tran-To Su, Wei-Li Ling, Wai-Heng Lua, Jun-Jie Poh, Samuel Ken-En Gan

Sci Rep· June 2017

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Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: A story of bad signal peptides and good ones that nevertheless do not make it.
Wai-Heng Lua, Wei-Li Ling, Chinh Tran-To Su, Joshua Yi Yeo, Chandra Shekhar Verma

Cell Cycle· March 2017

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Structural analyses of 2015-updated drug-resistant mutations in HIV-1 protease: an implication of protease inhibitor cross-resistance.
Chinh Tran-To Su, Wei-Li Ling, Wai-Heng Lua, Yu-Xuan Haw, Samuel Ken-En Gan

BMC Bioinformatics· December 2016

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Structural analysis of the novel influenza A (H7N9) viral Neuraminidase interactions with current approved neuraminidase inhibitors Oseltamivir, Zanamivir, and Peramivir in the presence of mutation R289K.
Chinh Tran-To Su, Xuchang Ouyang, Jie Zheng, Chee-Keong Kwoh

BMC Bioinformatics· April 2014

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CovalentDock: automated covalent docking with parameterized covalent linkage energy estimation and molecular geometry constraints.
Xuchang Ouyang, Shuo Zhou, Chinh Tran To Su, Zemei Ge, Runtao Li

J Comput Chem· February 2013

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QuickVina: accelerating AutoDock Vina using gradient-based heuristics for global optimization.
Stephanus Daniel Handoko, Xuchang Ouyang, Chinh Tran To Su, Chee Keong Kwoh, Yew Soon Ong

IEEE/ACM Trans Comput Biol Bioinform· January 2013

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