Publications by authors named "Christopher Pockrandt"

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Author Correction: Metagenome analysis using the Kraken software suite.
Jennifer Lu, Natalia Rincon, Derrick E Wood, Florian P Breitwieser, Christopher Pockrandt

Nat Protoc· August 2024

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CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure.
Ales Varabyou, Markus J Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin, Christopher Pockrandt

Genome Biol· October 2023

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Metagenomic classification with KrakenUniq on low-memory computers.
Christopher Pockrandt, Aleksey V Zimin, Steven L Salzberg

J Open Source Softw· December 2022

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Metagenome analysis using the Kraken software suite.
Jennifer Lu, Natalia Rincon, Derrick E Wood, Florian P Breitwieser, Christopher Pockrandt

Nat Protoc· December 2022

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Identification of microbial agents in tissue specimens of ocular and periocular sarcoidosis using a metagenomics approach.
Amde Selassie Shifera, Christopher Pockrandt, Natalia Rincon, Yuchen Ge, Jennifer Lu

F1000Res· October 2022

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PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools.
Christopher Pockrandt, Martin Steinegger, Steven L Salzberg

Bioinformatics· February 2022

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TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.
Ales Varabyou, Geo Pertea, Christopher Pockrandt, Mihaela Pertea

Bioinformatics· October 2021

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Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.
Ales Varabyou, Christopher Pockrandt, Steven L Salzberg, Mihaela Pertea

Genetics· July 2021

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Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie.
Ales Varabyou, Christopher Pockrandt, Steven L Salzberg, Mihaela Pertea

bioRxiv· September 2020

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GenMap: ultra-fast computation of genome mappability.
Christopher Pockrandt, Mai Alzamel, Costas S Iliopoulos, Knut Reinert

Bioinformatics· June 2020

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VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9.
Laurence O W Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C Bauer

BMC Biotechnol· June 2019

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The SeqAn C++ template library for efficient sequence analysis: A resource for programmers.
Knut Reinert, Temesgen Hailemariam Dadi, Marcel Ehrhardt, Hannes Hauswedell, Svenja Mehringer, Christopher Pockrandt

J Biotechnol· November 2017

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