Publications by authors named "Claire Bertelli"

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European pilot interlaboratory comparison study on Mpox virus whole genome sequencing.
Jonas Fuchs, Claire Bertelli, Trestan Pillonel, Rita Cordeiro, Jacques Izopet

Clin Microbiol Infect· January 2026

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A nosocomial outbreak of linked to cosmetic water mist sprays in the intensive care unit of a tertiary care hospital, Switzerland, 2024.
Alicia Cancela Costa, Dominique S Blanc, Claire Bertelli, Trestan Pillonel, Damien Jacot

Euro Surveill· December 2025

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zAMP and zAMPExplorer: reproducible scalable amplicon-based metagenomics analysis and visualization.
Valentin Scherz, Sedreh Nassirnia, Farid Chaabane, Violeta Castelo-Szekely, Gilbert Greub, Claire Bertelli

Bioinform Adv· November 2025

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Concordance between upper and lower airway microbiota in children with cystic fibrosis.
Sedreh Nassirnia, Valentin Scherz, Gilbert Greub, Giorgia Caruana, Patrick Taffé, Claire Bertelli

J Med Microbiol· September 2025

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Blood metabolomics improves prediction of central nervous system damage in multiple sclerosis.
Jessica Rebeaud, Nicholas Edward Phillips, Guillaume Thévoz, Solenne Vigne, Sedreh Nassirnia, Claire Bertelli

Metabolomics· August 2025

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Plasmid diversity of and isolates involved in two carbapenem-resistant outbreaks in a Swiss hospital.
Florian Mauffrey, Claire Bertelli, Gilbert Greub, Bruno Grandbastien, Laurence Senn

Microbiol Spectr· July 2025

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Draft genomes of 12 isolates recovered from hospitalized patients and contaminated cosmetic water sprays.
Trestan Pillonel, Dominique Blanc, Damien Jacot, Florian Mauffrey, Estelle Ben Salah-Moulin, Claire Bertelli

Microbiol Resour Announc· July 2025

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Lung and gut microbiota profiling in intensive care unit patients: a prospective pilot study.
Antonios Kritikos, Eric Bernasconi, Yangji Choi, Valentin Scherz, Jean-Luc Pagani, Claire Bertelli

BMC Infect Dis· April 2025

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MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation.
Farid Chaabane, Trestan Pillonel, Claire Bertelli

Bioinformatics· December 2024

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Association of pathogenic determinants of Fusobacterium necrophorum with bacteremia, and Lemierre's syndrome.
Alessia Carrara, Claire Bertelli, Céline Gardiol, Bastian Marquis, Diego O Andrey

Sci Rep· August 2024

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Conference report: the first bacterial genome sequencing pan-European network conference.
Zoja Germuskova, Elisa Sosa, Amaya Campillay Lagos, Hege Vangstein Aamot, Mathew A Beale, Claire Bertelli

Microbes Infect· August 2024

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Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak.
Florian Mauffrey, Claire Bertelli, Gilbert Greub, Laurence Senn, Dominique S Blanc

J Clin Microbiol· July 2024

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zDB: bacterial comparative genomics made easy.
Bastian Marquis, Trestan Pillonel, Alessia Carrara, Claire Bertelli

mSystems· July 2024

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How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort.
Fanny Wegner, Blanca Cabrera-Gil, Araud Tanguy, Christiane Beckmann, Niko Beerenwinkel, Claire Bertelli

Microbiol Spectr· May 2024

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In vivo reprogramming leads to premature death linked to hepatic and intestinal failure.
Alberto Parras, Alba Vílchez-Acosta, Gabriela Desdín-Micó, Sara Picó, Calida Mrabti, Claire Bertelli

Nat Aging· December 2023

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Temporal changes in fecal microbiota of patients infected with COVID-19: a longitudinal cohort.
Tatiana Galperine, Yangji Choi, Jean-Luc Pagani, Antonios Kritikos, Matthaios Papadimitriou-Olivgeris, Claire Bertelli

BMC Infect Dis· August 2023

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The Swiss Pathogen Surveillance Platform - towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata.
Aitana Neves, Daniel Walther, Trinidad Martin-Campos, Valerie Barbie, Claire Bertelli

Microb Genom· May 2023

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Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data.
Sarah A Nadeau, Timothy G Vaughan, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Claire Bertelli

Sci Transl Med· January 2023

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Understanding the parameters guiding the best practice for treating B-cell-depleted patients with COVID-19 convalescent plasma therapy.
David Gachoud, Claire Bertelli, Nathalie Rufer

Br J Haematol· January 2023

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Geneticin shows selective antiviral activity against SARS-CoV-2 by interfering with programmed -1 ribosomal frameshifting.
Carmine Varricchio, Gregory Mathez, Trestan Pillonel, Claire Bertelli, Laurent Kaiser

Antiviral Res· December 2022

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Detection of SARS-CoV-2 infection clusters: The useful combination of spatiotemporal clustering and genomic analyses.
Yangji Choi, Anaïs Ladoy, David De Ridder, Damien Jacot, Séverine Vuilleumier, Claire Bertelli

Front Public Health· December 2022

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Alpha and Omicron SARS-CoV-2 Adaptation in an Upper Respiratory Tract Model.
Gregory Mathez, Trestan Pillonel, Claire Bertelli, Valeria Cagno

Viruses· December 2022

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Antibody response and intra-host viral evolution after plasma therapy in COVID-19 patients pre-exposed or not to B-cell-depleting agents.
David Gachoud, Trestan Pillonel, Gerasimos Tsilimidos, Dunia Battolla, Dominique Dumas, Claire Bertelli

Br J Haematol· November 2022

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Prevalence and Factors Associated with Prosthetic Joint Infections in Patients with Bacteraemia: A 7-Year Retrospective Study.
Matthaios Papadimitriou-Olivgeris, Laurence Senn, Claire Bertelli, Bruno Grandbastien, Sylvain Steinmetz

Antibiotics (Basel)· September 2022

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Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks.
Claire Bertelli, Kristen L Gray, Nolan Woods, Adrian C Lim, Keith E Tilley

Microb Genom· May 2022

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