Publications by authors named "Clemence Frioux"

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Modeling the emergent metabolic potential of soil microbiomes in Atacama landscapes.
Constanza M Andreani-Gerard, Natalia E Jiménez, Ricardo Palma, Coralie Muller, Pauline Hamon-Giraud, Clémence Frioux

Environ Microbiome· November 2025

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Detecting signatures underlying the composition of biological data.
Anthony Duncan, Wing Koon, Katarzyna Sidorczuk, Christopher Quince, Clémence Frioux

Nucleic Acids Res· November 2025

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Mapler: a pipeline for assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads.
Nicolas Maurice, Claire Lemaitre, Riccardo Vicedomini, Clémence Frioux

Bioinformatics· June 2025

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Seed2LP: seed inference in metabolic networks for reverse ecology applications.
Chabname Ghassemi Nedjad, Mathieu Bolteau, Lucas Bourneuf, Loïc Paulevé, Clémence Frioux

Bioinformatics· March 2025

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Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling.
Maxime Lecomte, Wenfan Cao, Julie Aubert, David James Sherman, Hélène Falentin, Clémence Frioux

Metab Eng· May 2024

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Community-scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing.
Klara Cerk, Pablo Ugalde-Salas, Chabname Ghassemi Nedjad, Maxime Lecomte, Coralie Muller, Clémence Frioux

Microb Biotechnol· January 2024

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Enterosignatures define common bacterial guilds in the human gut microbiome.
Clémence Frioux, Rebecca Ansorge, Ezgi Özkurt, Chabname Ghassemi Nedjad, Joachim Fritscher

Cell Host Microbe· July 2023

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Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe.
Arnaud Belcour, Jeanne Got, Méziane Aite, Ludovic Delage, Jonas Collén, Clémence Frioux

Genome Res· July 2023

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Insights into the potential for mutualistic and harmful host-microbe interactions affecting brown alga freshwater acclimation.
Hetty KleinJan, Clémence Frioux, Gianmaria Califano, Méziane Aite, Enora Fremy

Mol Ecol· February 2023

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Dispersal strategies shape persistence and evolution of human gut bacteria.
Falk Hildebrand, Toni I Gossmann, Clémence Frioux, Ezgi Özkurt, Pernille Neve Myers

Cell Host Microbe· July 2021

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Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines.
Elham Karimi, Enora Geslain, Arnaud Belcour, Clémence Frioux, Méziane Aïte

PeerJ· May 2021

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Metagenomic assessment of the global diversity and distribution of bacteria and fungi.
Mohammad Bahram, Tarquin Netherway, Clémence Frioux, Pamela Ferretti, Luis Pedro Coelho

Environ Microbiol· January 2021

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Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species.
Arnaud Belcour, Clémence Frioux, Méziane Aite, Anthony Bretaudeau, Falk Hildebrand

Elife· December 2020

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The genome of Ectocarpus subulatus - A highly stress-tolerant brown alga.
Simon M Dittami, Erwan Corre, Loraine Brillet-Guéguen, Agnieszka P Lipinska, Noé Pontoizeau, Clémence Frioux

Mar Genomics· August 2020

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Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host-microbial interactions.
Clémence Frioux, Simon M Dittami, Anne Siegel

Biochem Soc Trans· June 2020

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From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes.
Clémence Frioux, Dipali Singh, Tamas Korcsmaros, Falk Hildebrand

Comput Struct Biotechnol J· June 2020

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Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae and .
Delphine Nègre, Méziane Aite, Arnaud Belcour, Clémence Frioux, Loraine Brillet-Guéguen

Antioxidants (Basel)· November 2019

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Scalable and exhaustive screening of metabolic functions carried out by microbial consortia.
Clémence Frioux, Enora Fremy, Camille Trottier, Anne Siegel

Bioinformatics· September 2018

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Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.
Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier, Jeanne Got

PLoS Comput Biol· May 2018

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Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks.
Julie Laniau, Clémence Frioux, Jacques Nicolas, Caroline Baroukh, Maria-Paz Cortes

PeerJ· October 2017

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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.
Sylvain Prigent, Clémence Frioux, Simon M Dittami, Sven Thiele, Abdelhalim Larhlimi

PLoS Comput Biol· January 2017

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Crystal structure and biochemical characterization of a manganese superoxide dismutase from Chaetomium thermophilum.
Teemu Haikarainen, Clémence Frioux, Li-Qing Zhnag, Duo-Chuan Li, Anastassios C Papageorgiou

Biochim Biophys Acta· February 2014

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