Publications by authors named "Clement Jonquet"

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RDF graph pair profile dataset for the data linking community.
Raphaël Conde Salazar, Clément Jonquet, Danai Symeonidou

Data Brief· December 2024

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A maturity model for catalogues of semantic artefacts.
Oscar Corcho, Fajar J Ekaputra, Ivan Heibi, Clement Jonquet, Andras Micsik

Sci Data· May 2024

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C3PO: a crop planning and production process ontology and knowledge graph.
Baptiste Darnala, Florence Amardeilh, Catherine Roussey, Konstantin Todorov, Clément Jonquet

Front Artif Intell· October 2023

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French FastContext: A publicly accessible system for detecting negation, temporality and experiencer in French clinical notes.
Mehdi Mirzapour, Amine Abdaoui, Andon Tchechmedjiev, William Digan, Sandra Bringay, Clement Jonquet

J Biomed Inform· May 2021

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Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy.
Aravind Venkatesan, Gildas Tagny Ngompe, Nordine El Hassouni, Imene Chentli, Valentin Guignon, Clement Jonquet

PLoS One· April 2019

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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison.
Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet

BMC Bioinformatics· April 2019

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SIFR annotator: ontology-based semantic annotation of French biomedical text and clinical notes.
Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Stella Zevio, Clement Jonquet

BMC Bioinformatics· November 2018

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Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator.
Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Soumia Melzi, Jitendra Jonnagaddala, Clement Jonquet

Bioinformatics· June 2018

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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, Clement Jonquet

Database (Oxford)· January 2018

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Developing data interoperability using standards: A wheat community use case.
Esther Dzale Yeumo, Michael Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, Clement Jonquet

F1000Res· October 2017

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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.
Marcos Martínez-Romero, Clement Jonquet, Martin J O'Connor, John Graybeal, Alejandro Pazos

J Biomed Semantics· June 2017

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An approach to compare bio-ontologies portals.
Julien Grosjean, Lina F Soualmia, Khedidja Bouarech, Clément Jonquet, Stéfan J Darmoni

Stud Health Technol Inform· May 2015

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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources.
Clement Jonquet, Paea Lependu, Sean Falconer, Adrien Coulet, Natalya F Noy

Web Semant· September 2011

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The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies.
Gautam K Parai, Clement Jonquet, Rong Xu, Mark A Musen, Nigam H Shah

AMIA Annu Symp Proc· November 2010

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A UIMA wrapper for the NCBO annotator.
Christophe Roeder, Clement Jonquet, Nigam H Shah, William A Baumgartner, Karin Verspoor

Bioinformatics· July 2010

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Building a biomedical ontology recommender web service.
Clement Jonquet, Mark A Musen, Nigam H Shah

J Biomed Semantics· June 2010

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Comparison of concept recognizers for building the Open Biomedical Annotator.
Nigam H Shah, Nipun Bhatia, Clement Jonquet, Daniel Rubin, Annie P Chiang

BMC Bioinformatics· September 2009

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BioPortal: ontologies and integrated data resources at the click of a mouse.
Natalya F Noy, Nigam H Shah, Patricia L Whetzel, Benjamin Dai, Michael Dorf, Clement Jonquet

Nucleic Acids Res· July 2009

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The open biomedical annotator.
Clement Jonquet, Nigam H Shah, Mark A Musen

Summit Transl Bioinform· March 2009

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Ontology-driven indexing of public datasets for translational bioinformatics.
Nigam H Shah, Clement Jonquet, Annie P Chiang, Atul J Butte, Rong Chen

BMC Bioinformatics· February 2009

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