Publications by authors named "Daan R Speth"

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Urea use drives niche separation between dominant marine ammonia oxidizing archaea.
Joerdis Stuehrenberg, Katharina Kitzinger, Jan N von Arx, Jon S Graf, Gaute Lavik, Daan R Speth

Nat Commun· December 2025

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GlobDB: a comprehensive species-dereplicated microbial genome resource.
Daan R Speth, Nick Pullen, Samuel T N Aroney, Benjamin L Coltman, Jay Osvatic

Bioinform Adv· November 2025

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Identification of key steps in the evolution of anaerobic methanotrophy in Methanovorans (ANME-3) archaea.
Philip H Woods, Daan R Speth, Rafael Laso-Pérez, Daniel R Utter, S Emil Ruff

Sci Adv· June 2025

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Biochar application using recycled annual self straw reduces long-term greenhouse gas emissions from paddy fields with economic benefits.
Qiong Nan, Daan R Speth, Yong Qin, Wenchen Chi, Jana Milucka

Nat Food· May 2025

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Occurrence and temporal dynamics of denitrifying protist endosymbionts in the wastewater microbiome.
Louison Nicolas-Asselineau, Daan R Speth, Linus M Zeller, Ben J Woodcroft, Caitlin M Singleton

ISME Commun· January 2025

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Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts.
Daan R Speth, Linus M Zeller, Jon S Graf, Will A Overholt, Kirsten Küsel

Nat Commun· November 2024

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Thermotogota diversity and distribution patterns revealed in and hydrothermal vent fields in the Pescadero Basin, Gulf of California.
Manet E Peña-Salinas, Daan R Speth, Daniel R Utter, Ronald M Spelz, Sujung Lim

PeerJ· August 2024

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Publisher Correction: Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor.
Paloma Garrido-Amador, Niek Stortenbeker, Hans J C T Wessels, Daan R Speth, Inmaculada Garcia-Heredia

Nat Microbiol· June 2024

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Rhizobia-diatom symbiosis fixes missing nitrogen in the ocean.
Bernhard Tschitschko, Mertcan Esti, Miriam Philippi, Abiel T Kidane, Sten Littmann, Daan R Speth

Nature· June 2024

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Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility.
Sina Schorn, Jon S Graf, Sten Littmann, Philipp F Hach, Gaute Lavik, Daan R Speth

Nat Commun· June 2024

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Extracellular vesicle formation in is driven by a small GTPase.
Joshua Mills, L Johanna Gebhard, Florence Schubotz, Anna Shevchenko, Daan R Speth

Proc Natl Acad Sci U S A· March 2024

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Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea.
Ranjani Murali, Hang Yu, Daan R Speth, Fabai Wu, Kyle S Metcalfe

PLoS Biol· September 2023

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Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor.
Paloma Garrido-Amador, Niek Stortenbeker, Hans J C T Wessels, Daan R Speth, Inmaculada Garcia-Heredia

Nat Microbiol· August 2023

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Evolutionary diversification of methanotrophic ANME-1 archaea and their expansive virome.
Rafael Laso-Pérez, Fabai Wu, Antoine Crémière, Daan R Speth, John S Magyar

Nat Microbiol· February 2023

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Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA.
Heidi S Aronson, Danielle R Monteverde, Ben Davis Barnes, Brooke R Johnson, Mike J Zawaski, Daan R Speth

Geobiology· September 2022

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Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily.
Daan R Speth, Feiqiao B Yu, Stephanie A Connon, Sujung Lim, John S Magyar

ISME J· July 2022

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Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep.
Hang Yu, Daan R Speth, Stephanie A Connon, Danielle Goudeau, Rex R Malmstrom

Appl Environ Microbiol· June 2022

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Unique mobile elements and scalable gene flow at the prokaryote-eukaryote boundary revealed by circularized Asgard archaea genomes.
Fabai Wu, Daan R Speth, Alon Philosof, Antoine Crémière, Aditi Narayanan

Nat Microbiol· February 2022

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Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea.
Grayson L Chadwick, Connor T Skennerton, Rafael Laso-Pérez, Andy O Leu, Daan R Speth

PLoS Biol· January 2022

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Microbial succession and dynamics in meromictic Mono Lake, California.
Alexandra A Phillips, Daan R Speth, Laurence G Miller, Xingchen T Wang, Fenfang Wu

Geobiology· July 2021

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A Novel Laboratory-Scale Mesocosm Setup to Study Methane Emission Mitigation by Mosses and Associated Methanotrophs.
Martine A R Kox, Alfons J P Smolders, Daan R Speth, Leon P M Lamers, Huub J M Op den Camp

Front Microbiol· April 2021

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Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments.
Mohammad Ghashghavi, Svetlana E Belova, Paul L E Bodelier, Svetlana N Dedysh, Martine A R Kox, Daan R Speth

mSphere· June 2019

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Metabolic marker gene mining provides insight in global diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the .
Daan R Speth, Victoria J Orphan

PeerJ· September 2018

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Comparative Genomics of Methylomirabilis Species and Description of . Methylomirabilis Lanthanidiphila.
Wouter Versantvoort, Simon Guerrero-Cruz, Daan R Speth, Jeroen Frank, Lavinia Gambelli

Front Microbiol· July 2018

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Correction for Brigham et al., "Whole-Genome Microarray and Gene Deletion Studies Reveal Regulation of the Polyhydroxyalkanoate Production Cycle by the Stringent Response in Ralstonia eutropha H16".
Christopher J Brigham, Daan R Speth, ChoKyun Rha, Anthony J Sinskey

Appl Environ Microbiol· August 2017

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