Publications by authors named "Daniel R Utter"

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Non-cognate immunity proteins provide broader defenses against interbacterial effectors in microbial communities.
Abigail Knecht, Denise Sirias, Daniel R Utter, Karine A Gibbs

Elife· September 2025

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CABO-16S-a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples.
Eryn M Eitel, Daniel R Utter, Stephanie A Connon, Victoria J Orphan, Ranjani Murali

NAR Genom Bioinform· June 2025

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Identification of key steps in the evolution of anaerobic methanotrophy in Methanovorans (ANME-3) archaea.
Philip H Woods, Daan R Speth, Rafael Laso-Pérez, Daniel R Utter, S Emil Ruff

Sci Adv· June 2025

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Microbial Cycling of Sulfur and Other Redox-Sensitive Elements in Porewaters of San Clemente Basin, California, and Cocos Ridge, Costa Rica.
Daniela Osorio-Rodriguez, Frank J Pavia, Daniel R Utter, Matthew Quinan, Kameko Landry

Geobiology· May 2025

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Array of metabolic pathways in a kleptoplastidic foraminiferan protist supports chemoautotrophy in dark, euxinic seafloor sediments.
Fatma Gomaa, Daniel R Rogers, Daniel R Utter, Christopher Powers, I-Ting Huang

ISME J· January 2025

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Thermotogota diversity and distribution patterns revealed in and hydrothermal vent fields in the Pescadero Basin, Gulf of California.
Manet E Peña-Salinas, Daan R Speth, Daniel R Utter, Ronald M Spelz, Sujung Lim

PeerJ· August 2024

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Persistent enrichment of multidrug-resistant Klebsiella in oral and nasal communities during long-term starvation.
Jett Liu, Nell Spencer, Daniel R Utter, Alex S Grossman, Lei Lei

Microbiome· July 2024

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Persistent enrichment of multidrug resistant in oral and nasal communities during long-term starvation.
Jett Liu, Nell Spencer, Daniel R Utter, Alex Grossman, Nídia C D Santos

bioRxiv· December 2023

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Genome-Centric Dynamics Shape the Diversity of Oral Bacterial Populations.
Daniel R Utter, Colleen M Cavanaugh, Gary G Borisy

mBio· December 2022

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Exploitation of a Bacterium-Encoded Lytic Transglycosylase by a Human Oral Lytic Phage To Facilitate Infection.
Lujia Cen, Yunjie Chang, Joseph K Bedree, Yansong Ma, Qiu Zhong, Daniel R Utter

J Virol· September 2022

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Draft Genome Sequences of Nine " Nanosynbacter sp. HMT-352" Strains Cultured from the Human Oral Cavity.
Jett Liu, Daniel R Utter, Jie Nie, Kristopher A Kerns, Eleanor I Lamont

Microbiol Resour Announc· August 2022

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Strain-Level Variation and Diverse Host Bacterial Responses in Episymbiotic Saccharibacteria.
Jie Nie, Daniel R Utter, Kristopher A Kerns, Eleanor I Lamont, Erik L Hendrickson

mSystems· April 2022

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Exploring the protist microbiome: The diversity of bacterial communities associated with Arcella spp. (Tubulina: Amoebozoa).
Fatma Gomaa, Daniel R Utter, Wesley Loo, Daniel J G Lahr, Colleen M Cavanaugh

Eur J Protistol· February 2022

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Acquisition of the arginine deiminase system benefits epiparasitic Saccharibacteria and their host bacteria in a mammalian niche environment.
Jing Tian, Daniel R Utter, Lujia Cen, Pu-Ting Dong, Wenyuan Shi

Proc Natl Acad Sci U S A· January 2022

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Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation.
Otari Chipashvili, Daniel R Utter, Joseph K Bedree, Yansong Ma, Fabian Schulte

Cell Host Microbe· November 2021

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Multiple integrated metabolic strategies allow foraminiferan protists to thrive in anoxic marine sediments.
Fatma Gomaa, Daniel R Utter, Christopher Powers, David J Beaudoin, Virginia P Edgcomb

Sci Adv· May 2021

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The saccharibacterium TM7x elicits differential responses across its host range.
Daniel R Utter, Xuesong He, Colleen M Cavanaugh, Jeffrey S McLean, Batbileg Bor

ISME J· December 2020

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Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity.
Daniel R Utter, Gary G Borisy, A Murat Eren, Colleen M Cavanaugh, Jessica L Mark Welch

Genome Biol· December 2020

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A Few Oligotypes Dominate in the Meat and Dairy Processing Environment.
Giuseppina Stellato, Daniel R Utter, Andy Voorhis, Maria De Angelis, A Murat Eren

Front Microbiol· March 2017

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Individuality, Stability, and Variability of the Plaque Microbiome.
Daniel R Utter, Jessica L Mark Welch, Gary G Borisy

Front Microbiol· May 2016

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Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping.
Jessica L Mark Welch, Daniel R Utter, Blair J Rossetti, David B Mark Welch, A Murat Eren

Front Microbiol· November 2014

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