Publications by authors named "Dana Weekes"

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bNAber: database of broadly neutralizing HIV antibodies.
Alexey M Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li

Nucleic Acids Res· January 2014

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Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.
Qingping Xu, Neil D Rawlings, Carol L Farr, Hsiu-Ju Chiu, Joanna C Grant, Dana Weekes

PLoS One· December 2011

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TOPSAN: a dynamic web database for structural genomics.
Kyle Ellrott, Christian M Zmasek, Dana Weekes, S Sri Krishna, Constantina Bakolitsa

Nucleic Acids Res· January 2011

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Structure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism.
Hsiu Ju Chiu, Constantina Bakolitsa, Arne Skerra, Andrei Lomize, Dennis Carlton, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role.
S Sri Krishna, L Aravind, Constantina Bakolitsa, Jonathan Caruthers, Dennis Carlton, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.
Mitchell D Miller, L Aravind, Constantina Bakolitsa, Christopher L Rife, Dennis Carlton, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation.
Debanu Das, Nick V Grishin, Abhinav Kumar, Dennis Carlton, Constantina Bakolitsa, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
Constantina Bakolitsa, Abhinav Kumar, Kevin K Jin, Daniel McMullan, S Sri Krishna, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator.
Constantina Bakolitsa, Alex Bateman, Kevin K Jin, Daniel McMullan, S Sri Krishna, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.
Constantina Bakolitsa, Abhinav Kumar, Dennis Carlton, Mitchell D Miller, S Sri Krishna, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism.
Constantina Bakolitsa, Abhinav Kumar, Daniel McMullan, S Sri Krishna, Mitchell D Miller, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
Gye Won Han, Constantina Bakolitsa, Mitchell D Miller, Abhinav Kumar, Dennis Carlton, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.
Gye Won Han, Marc André Elsliger, Todd O Yeates, Qingping Xu, Alexey G Murzin, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.
Abhinav Kumar, Andrei Lomize, Kevin K Jin, Dennis Carlton, Mitchell D Miller, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae, reveals an OB-fold.
Debanu Das, Piotr Kozbial, Gye Won Han, Dennis Carlton, Lukasz Jaroszewski, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.
Debanu Das, Robert D Finn, Dennis Carlton, Mitchell D Miller, Polat Abdubek, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules.
Constantina Bakolitsa, Qingping Xu, Christopher L Rife, Polat Abdubek, Tamara Astakhova, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution.
Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.
Andrew P Yeh, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron.
Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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The structure of Haemophilus influenzae prephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes.
Hsiu Ju Chiu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Dennis Carlton, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster.
Gye Won Han, Xiang Lei Yang, Daniel McMullan, Yeeting E Chong, S Sri Krishna, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger.
Herbert L Axelrod, Debanu Das, Polat Abdubek, Tamara Astakhova, Constantina Bakolitsa, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.
Herbert L Axelrod, Piotr Kozbial, Daniel McMullan, S Sri Krishna, Mitchell D Miller, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.
Qingping Xu, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Dana Weekes

Acta Crystallogr Sect F Struct Biol Cryst Commun· October 2010

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