Publications by authors named "Neil D Rawlings"

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How to use the MEROPS database and website to help understand peptidase specificity.
Neil D Rawlings, Alex Bateman

Protein Sci· January 2021

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Twenty-five years of nomenclature and classification of proteolytic enzymes.
Neil D Rawlings

Biochim Biophys Acta Proteins Proteom· February 2020

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Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
Fuyi Li, Yanan Wang, Chen Li, Tatiana T Marquez-Lago, André Leier, Neil D Rawlings

Brief Bioinform· November 2019

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Origins of peptidases.
Neil D Rawlings, Alex Bateman

Biochimie· November 2019

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iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites.
Jiangning Song, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Neil D Rawlings

Brief Bioinform· March 2019

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Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.
Lorna J Richardson, Neil D Rawlings, Gustavo A Salazar, Alexandre Almeida, David R Haft

Nucleic Acids Res· January 2019

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InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Alex L Mitchell, Teresa K Attwood, Patricia C Babbitt, Matthias Blum, Peer Bork, Neil D Rawlings

Nucleic Acids Res· January 2019

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Using the MEROPS Database for Investigation of Lysosomal Peptidases, Their Inhibitors, and Substrates.
Neil D Rawlings

Methods Mol Biol· February 2018

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The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database.
Neil D Rawlings, Alan J Barrett, Paul D Thomas, Xiaosong Huang, Alex Bateman

Nucleic Acids Res· January 2018

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InterPro in 2017-beyond protein family and domain annotations.
Robert D Finn, Teresa K Attwood, Patricia C Babbitt, Alex Bateman, Peer Bork, Neil D Rawlings

Nucleic Acids Res· January 2017

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Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
Patricia C Babbitt, Pantelis G Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Neil D Rawlings

Database (Oxford)· May 2016

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Peptidase specificity from the substrate cleavage collection in the MEROPS database and a tool to measure cleavage site conservation.
Neil D Rawlings

Biochimie· March 2016

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Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors.
Neil D Rawlings, Alan J Barrett, Robert Finn

Nucleic Acids Res· January 2016

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Bacterial calpains and the evolution of the calpain (C2) family of peptidases.
Neil D Rawlings

Biol Direct· November 2015

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Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
Yong H Woo, Hifzur Ansari, Thomas D Otto, Christen M Klinger, Martin Kolisko, Neil D Rawlings

Elife· July 2015

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Key challenges for the creation and maintenance of specialist protein resources.
Gemma L Holliday, Amos Bairoch, Pantelis G Bagos, Arnaud Chatonnet, David J Craik, Neil D Rawlings

Proteins· June 2015

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Using the MEROPS Database for Proteolytic Enzymes and Their Inhibitors and Substrates.
Neil D Rawlings, Alan J Barrett, Alex Bateman

Curr Protoc Bioinformatics· December 2014

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Genomic analysis of the causative agents of coccidiosis in domestic chickens.
Adam J Reid, Damer P Blake, Hifzur R Ansari, Karen Billington, Hilary P Browne, Neil D Rawlings

Genome Res· October 2014

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Evolution of the thermopsin peptidase family (A5).
Neil D Rawlings

PLoS One· September 2014

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Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.
Debanu Das, Alexey G Murzin, Neil D Rawlings, Robert D Finn, Penelope Coggill

BMC Bioinformatics· March 2014

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The first structure in a family of peptidase inhibitors reveals an unusual Ig-like fold.
Daniel J Rigden, Qingping Xu, Yuanyuan Chang, Ruth Y Eberhardt, Robert D Finn, Neil D Rawlings

F1000Res· February 2014

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A novel RCE1 isoform is required for H-Ras plasma membrane localization and is regulated by USP17.
Jakub Jaworski, Ureshnie Govender, Cheryl McFarlane, Michelle de la Vega, Michelle K Greene, Neil D Rawlings

Biochem J· January 2014

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MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.
Neil D Rawlings, Matthew Waller, Alan J Barrett, Alex Bateman

Nucleic Acids Res· January 2014

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New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily.
Christine B Trame, Yuanyuan Chang, Herbert L Axelrod, Ruth Y Eberhardt, Penelope Coggill, Neil D Rawlings

BMC Bioinformatics· January 2014

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LUD, a new protein domain associated with lactate utilization.
William C Hwang, Constantina Bakolitsa, Marco Punta, Penelope C Coggill, Alex Bateman, Neil D Rawlings

BMC Bioinformatics· November 2013

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