Publications by authors named "Robert Finn"

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HoloFoodR: a statistical programming framework for holo-omics data integration workflows.
Tuomas Borman, Artur Sannikov, Robert D Finn, Morten Tønsberg Limborg, Alexander B Rogers

Bioinformatics· November 2025

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Ensembl 2026.
Andrew D Yates, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Robert D Finn

Nucleic Acids Res· November 2025

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plastiC: A pipeline for recovery and characterization of plastid genomes from metagenomic datasets.
Ellen S Cameron, Mark L Blaxter, Robert D Finn

Wellcome Open Res· October 2025

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An Approach to Integrate Metagenomics, Metatranscriptomics and Metaproteomics Data in Public Data Resources.
Shengbo Wang, Satwant Kaur, Benoit J Kunath, Patrick May, Lorna Richardson, Robert D Finn

Proteomics· September 2025

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Establishing the ELIXIR Microbiome Community.
Robert D Finn, Bachir Balech, Josephine Burgin, Physilia Chua, Erwan Corre

F1000Res· September 2025

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A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages.
Varsha Kale, Germana Baldi, Martin Beracochea, Cecilie Clausen, Alejandra Escobar-Zepeda, Robert D Finn

Anim Microbiome· August 2025

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Assessing the safety of microbiome perturbations.
Aline Metris, Alan W Walker, Alicia Showering, Andrea Doolan, Andrew J McBain, Robert D Finn

Microb Genom· May 2025

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mettannotator: a comprehensive and scalable Nextflow annotation pipeline for prokaryotic assemblies.
Tatiana A Gurbich, Martin Beracochea, Nishadi H De Silva, Robert D Finn

Bioinformatics· February 2025

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GENCODE 2025: reference gene annotation for human and mouse.
Jonathan M Mudge, Sílvia Carbonell-Sala, Mark Diekhans, Jose Gonzalez Martinez, Toby Hunt, Robert D Finn

Nucleic Acids Res· January 2025

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EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024.
Matthew Thakur, Catherine Brooksbank, Robert D Finn, Helen V Firth, Julia Foreman

Nucleic Acids Res· January 2025

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Ensembl 2025.
Sarah C Dyer, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Robert D Finn

Nucleic Acids Res· January 2025

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HoloFood Data Portal: holo-omic datasets for analysing host-microbiota interactions in animal production.
Alexander B Rogers, Varsha Kale, Germana Baldi, Antton Alberdi, M Thomas P Gilbert, Robert D Finn

Database (Oxford)· January 2025

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CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome.
Murilo Caminotto Barbosa, João Fernando Marques da Silva, Leonardo Cardoso Alves, Robert D Finn, Alexandre Rossi Paschoal

Gigascience· January 2025

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The growing repertoire of phage anti-defence systems.
Khalimat Murtazalieva, Andre Mu, Aleksandra Petrovskaya, Robert D Finn

Trends Microbiol· December 2024

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Theoretical study of the temperature dependence of Auger-Meitner recombination in (Al,Ga)N quantum wells.
Joshua M McMahon, Robert Finn, Stefan Schulz

J Phys Condens Matter· December 2024

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Microbial occurrence and symbiont detection in a global sample of lichen metagenomes.
Gulnara Tagirdzhanova, Paul Saary, Ellen S Cameron, Carmen C G Allen, Arkadiy I Garber, Robert D Finn

PLoS Biol· November 2024

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Toxicity of Macroalgae Extracts to Larvae of the Northern House Mosquito.
Ahmed A Rashed, Yasmin M Heikal, Robert D Finn, Mohamed H Bayoumy, Amged El-Harairy

Life (Basel)· November 2024

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Fungtion: A Server for Predicting and Visualizing Fungal Effector Proteins.
Jiahui Li, Jinzheng Ren, Wei Dai, Christopher Stubenrauch, Robert D Finn

J Mol Biol· September 2024

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CELEBRIMBOR: core and accessory genes from metagenomes.
Joel Hellewell, Samuel T Horsfield, Johanna von Wachsmann, Tatiana A Gurbich, Robert D Finn

Bioinformatics· September 2024

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Diversity and specificity of molecular functions in cyanobacterial symbionts.
Ellen S Cameron, Santiago Sanchez, Nick Goldman, Mark L Blaxter, Robert D Finn

Sci Rep· August 2024

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Opposing life history strategies allow grass shrimp parasites to avoid a conflict of interest.
Robert P Finn, Julia C Buck

Oecologia· February 2024

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SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.
Thomas S B Schmidt, Anthony Fullam, Pamela Ferretti, Askarbek Orakov, Oleksandr M Maistrenko, Robert D Finn

Nucleic Acids Res· January 2024

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Ensembl 2024.
Peter W Harrison, M Ridwan Amode, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, Robert D Finn

Nucleic Acids Res· January 2024

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Challenges and opportunities in sharing microbiome data and analyses.
Curtis Huttenhower, Robert D Finn, Alice Carolyn McHardy

Nat Microbiol· November 2023

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metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data.
Haris Zafeiropoulos, Martin Beracochea, Stelios Ninidakis, Katrina Exter, Antonis Potirakis, Robert D Finn

Gigascience· December 2022

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