Publications by authors named "Marco Punta"

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Menin inhibition enhances graft-versus-leukemia effects by T-cell activation and endogenous retrovirus induction in AML.
Viktor Fetsch, Lennard Frederik Schwöbel, Ezgi Ozyerli-Goknar, Anna-Verena Stell, Marco Punta

Blood· October 2025

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Protein family annotation for the Unified Human Gastrointestinal Proteome by DPCfam clustering.
Federico Barone, Elena Tea Russo, Edith Natalia Villegas Garcia, Marco Punta, Stefano Cozzini

Sci Data· June 2024

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Impact of predicted HLA class I immunopeptidome on viral reservoir in a cohort of people living with HIV in Italy.
Pier Edoardo Rovatti, Camilla Muccini, Marco Punta, Laura Galli, Ilaria Mainardi

HLA· January 2024

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T-cell receptor determinants of response to chemoradiation in locally-advanced HPV16-driven malignancies.
Pablo Nenclares, Adrian Larkeryd, Floriana Manodoro, Jen Y Lee, Susan Lalondrelle, Marco Punta

Front Oncol· January 2024

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Harnessing T cell exhaustion and trogocytosis to isolate patient-derived tumor-specific TCR.
Francesco Manfredi, Lorena Stasi, Silvia Buonanno, Francesca Marzuttini, Maddalena Noviello, Marco Punta

Sci Adv· December 2023

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Driver mutations in and genes as potential targets for precision immunotherapy in uveal melanoma patients.
Sandra García-Mulero, Roberto Fornelino, Marco Punta, Stefano Lise, Mar Varela

Oncoimmunology· December 2023

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Phase II trial of hypomethylating agent combined with nivolumab for acute myeloid leukaemia relapse after allogeneic haematopoietic cell transplantation-Immune signature correlates with response.
Petya Apostolova, Stefanie Kreutmair, Cristina Toffalori, Marco Punta, Susanne Unger

Br J Haematol· October 2023

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Preexisting Immunity Drives the Response to Neoadjuvant Chemotherapy in Esophageal Adenocarcinoma.
Giuseppina Arbore, Luca Albarello, Gabriele Bucci, Marco Punta, Andrea Cossu

Cancer Res· September 2023

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DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets.
Elena Tea Russo, Federico Barone, Alex Bateman, Stefano Cozzini, Marco Punta

PLoS Comput Biol· October 2022

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Targeting MDM2 enhances antileukemia immunity after allogeneic transplantation via MHC-II and TRAIL-R1/2 upregulation.
Jenny N H G Ho, Dominik Schmidt, Theresa Lowinus, Jeongmin Ryoo, Elaine-Pashupati Dopfer, Marco Punta

Blood· September 2022

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Solution Structure of the BPSL1445 Protein of Reveals the SYLF Domain Three-Dimensional Fold.
Giacomo Quilici, Andrea Berardi, Chantal Fabris, Michela Ghitti, Marco Punta

ACS Chem Biol· January 2022

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The Immunogenic Potential of Recurrent Cancer Drug Resistance Mutations: An Study.
Marco Punta, Victoria A Jennings, Alan A Melcher, Stefano Lise

Front Immunol· April 2021

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Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.
Elena Tea Russo, Alessandro Laio, Marco Punta

BMC Bioinformatics· March 2021

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Clinical Reversion Analysis Identifies Hotspot Mutations and Predicted Neoantigens Associated with Therapy Resistance.
Stephen J Pettitt, Jessica R Frankum, Marco Punta, Stefano Lise, John Alexander

Cancer Discov· October 2020

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Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer.
Katharina von Loga, Andrew Woolston, Marco Punta, Louise J Barber, Beatrice Griffiths

Nat Commun· January 2020

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Author Correction: Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer.
Katharina von Loga, Andrew Woolston, Marco Punta, Louise J Barber, Beatrice Griffiths

Nat Commun· January 2020

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Identification of single nucleotide variants using position-specific error estimation in deep sequencing data.
Dimitrios Kleftogiannis, Marco Punta, Anuradha Jayaram, Shahneen Sandhu, Stephen Q Wong

BMC Med Genomics· August 2019

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Genomic and Transcriptomic Determinants of Therapy Resistance and Immune Landscape Evolution during Anti-EGFR Treatment in Colorectal Cancer.
Andrew Woolston, Khurum Khan, Georgia Spain, Louise J Barber, Beatrice Griffiths, Marco Punta

Cancer Cell· July 2019

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Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity.
Andreas Heindl, Adnan Mujahid Khan, Daniel Nava Rodrigues, Katherine Eason, Anguraj Sadanandam, Marco Punta

Nat Commun· September 2018

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Structure-based analysis of CysZ-mediated cellular uptake of sulfate.
Zahra Assur Sanghai, Qun Liu, Oliver B Clarke, Meagan Belcher-Dufrisne, Pattama Wiriyasermkul, Marco Punta

Elife· May 2018

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Homology-Based Annotation of Large Protein Datasets.
Marco Punta, Jaina Mistry

Methods Mol Biol· December 2017

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The Pfam protein families database: towards a more sustainable future.
Robert D Finn, Penelope Coggill, Ruth Y Eberhardt, Sean R Eddy, Jaina Mistry, Marco Punta

Nucleic Acids Res· January 2016

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The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.
Zachary Chiang, Ake Vastermark, Marco Punta, Penelope C Coggill, Jaina Mistry

Brief Bioinform· September 2015

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Prediction and analysis of intrinsically disordered proteins.
Marco Punta, István Simon, Zsuzsanna Dosztányi

Methods Mol Biol· August 2015

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Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions.
Padmaja Natarajan, Marco Punta, Abhinav Kumar, Andrew P Yeh, Adam Godzik

BMC Bioinformatics· January 2015

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