Publications by authors named "Daniel Haft"

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An updated evolutionary classification of CRISPR-Cas systems including rare variants.
Kira S Makarova, Sergey A Shmakov, Yuri I Wolf, Pascal Mutz, Han Altae-Tran, Daniel H Haft

Nat Microbiol· December 2025

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Cyanoexosortase B is essential for motility, biofilm formation, and scytonemin production in a filamentous cyanobacterium.
Gabriel A Parrett, Daniel H Haft, Maida Ruiz, Ferran Garcia-Pichel, Christopher C Ebmeier

mSphere· June 2025

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Myxosortase: an intramembrane protease that sorts MYXO-CTERM proteins to the cell surface.
Tingting Guo, Daniel H Haft, Daniel Wall

mBio· April 2025

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Novel selenoprotein neighborhoods suggest specialized biochemical processes.
Daniel H Haft, Igor Tolstoy

mSystems· April 2025

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β-Lactamase diversity in .
Andrew R Mack, Andrea M Hujer, Maria F Mojica, Magdalena A Taracila, Michael Feldgarden, Daniel H Haft

Antimicrob Agents Chemother· March 2025

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β-Lactamase diversity in .
Andrew R Mack, Andrea M Hujer, Maria F Mojica, Magdalena A Taracila, Michael Feldgarden, Daniel H Haft

Antimicrob Agents Chemother· March 2025

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InterPro: the protein sequence classification resource in 2025.
Matthias Blum, Antonina Andreeva, Laise Cavalcanti Florentino, Sara Rocio Chuguransky, Tiago Grego, Daniel H Haft

Nucleic Acids Res· January 2025

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RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.
Daniel H Haft, Azat Badretdin, George Coulouris, Michael DiCuccio, A Scott Durkin

Nucleic Acids Res· January 2024

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discovery of the myxosortases that process MYXO-CTERM and three novel prokaryotic C-terminal protein-sorting signals that share invariant Cys residues.
Daniel H Haft

J Bacteriol· January 2024

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InterPro in 2022.
Typhaine Paysan-Lafosse, Matthias Blum, Sara Chuguransky, Tiago Grego, Beatriz Lázaro Pinto, Daniel H Haft

Nucleic Acids Res· January 2023

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Eight Unexpected Selenoprotein Families in Organometallic Biochemistry in Clostridium difficile, in ABC Transport, and in Methylmercury Biosynthesis.
Daniel H Haft, Marc Gwadz

J Bacteriol· January 2023

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Curation of the AMRFinderPlus databases: applications, functionality and impact.
Michael Feldgarden, Vyacheslav Brover, Boris Fedorov, Daniel H Haft, Arjun B Prasad

Microb Genom· June 2022

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Consensus on β-Lactamase Nomenclature.
Patricia A Bradford, Robert A Bonomo, Karen Bush, Alessandra Carattoli, Michael Feldgarden, Daniel H Haft

Antimicrob Agents Chemother· April 2022

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Folding the unfoldable: using AlphaFold to explore spurious proteins.
Vivian Monzon, Daniel H Haft, Alex Bateman

Bioinform Adv· January 2022

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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence.
Michael Feldgarden, Vyacheslav Brover, Narjol Gonzalez-Escalona, Jonathan G Frye, Julie Haendiges, Daniel H Haft

Sci Rep· June 2021

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The InterPro protein families and domains database: 20 years on.
Matthias Blum, Hsin-Yu Chang, Sara Chuguransky, Tiago Grego, Swaathi Kandasaamy, Daniel H Haft

Nucleic Acids Res· January 2021

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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
Wenjun Li, Kathleen R O'Neill, Daniel H Haft, Michael DiCuccio, Vyacheslav Chetvernin

Nucleic Acids Res· January 2021

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Erratum for Feldgarden et al., "Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates".
Michael Feldgarden, Vyacheslav Brover, Daniel H Haft, Arjun B Prasad, Douglas J Slotta

Antimicrob Agents Chemother· March 2020

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A Standard Numbering Scheme for Class C β-Lactamases.
Andrew R Mack, Melissa D Barnes, Magdalena A Taracila, Andrea M Hujer, Kristine M Hujer, Daniel H Haft

Antimicrob Agents Chemother· February 2020

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Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.
Kira S Makarova, Yuri I Wolf, Jaime Iranzo, Sergey A Shmakov, Omer S Alkhnbashi, Daniel H Haft

Nat Rev Microbiol· February 2020

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Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.
Michael Feldgarden, Vyacheslav Brover, Daniel H Haft, Arjun B Prasad, Douglas J Slotta

Antimicrob Agents Chemother· November 2019

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Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.
Sally R Partridge, Vincenzo Di Pilato, Yohei Doi, Michael Feldgarden, Daniel H Haft

J Antimicrob Chemother· October 2018

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Both widespread PEP-CTERM proteins and exopolysaccharides are required for floc formation of Zoogloea resiniphila and other activated sludge bacteria.
Na Gao, Ming Xia, Jingcheng Dai, Dianzhen Yu, Weixing An, Daniel H Haft

Environ Microbiol· May 2018

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RefSeq: an update on prokaryotic genome annotation and curation.
Daniel H Haft, Michael DiCuccio, Azat Badretdin, Vyacheslav Brover, Vyacheslav Chetvernin

Nucleic Acids Res· January 2018

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A comprehensive software suite for protein family construction and functional site prediction.
David Renfrew Haft, Daniel H Haft

PLoS One· September 2017

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