Publications by authors named "Michael DiCuccio"

Claim this Profile
U
Uncovering position-specific patterns in codon and codon-pair usage in candidate genes associated with blood coagulation diseases.
Nathan J Clement, Nobuko Hamasaki-Katagiri, Brian Lin, Anton A Komar, Michael DiCuccio

NAR Genom Bioinform· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
Uncovering codon usage patterns during murine embryogenesis and tissue-specific developmental diseases.
Sarah E Fumagalli, Sean Smith, Brian Lin, Rahul Paul, Collin Campbell, Michael DiCuccio

Front Genet· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
SARS-CoV-2 CoCoPUTs: analyzing GISAID and NCBI data to obtain codon statistics, mutations, and free energy over a multiyear period.
Nigam H Padhiar, Tigran Ghazanchyan, Sarah E Fumagalli, Michael DiCuccio, Guy Cohen

Virus Evol· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mouse embryo CoCoPUTs: novel murine transcriptomic-weighted usage website featuring multiple strains, tissues, and stages.
Sarah E Fumagalli, Sean Smith, Tigran Ghazanchyan, Douglas Meyer, Rahul Paul, Michael DiCuccio

BMC Bioinformatics· September 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.
Daniel H Haft, Azat Badretdin, George Coulouris, Michael DiCuccio, A Scott Durkin

Nucleic Acids Res· January 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Database resources of the National Center for Biotechnology Information.
Eric W Sayers, Jeff Beck, Evan E Bolton, J Rodney Brister, Jessica Chan, Michael DiCuccio

Nucleic Acids Res· January 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Collection and curation of prokaryotic genome assemblies from type strains at NCBI.
Sivakumar Kannan, Shobha Sharma, Stacy Ciufo, Karen Clark, Seán Turner, Michael DiCuccio

Int J Syst Evol Microbiol· February 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Analysis of 3.5 million SARS-CoV-2 sequences reveals unique mutational trends with consistent nucleotide and codon frequencies.
Sarah E Fumagalli, Nigam H Padhiar, Douglas Meyer, Upendra Katneni, Haim Bar, Michael DiCuccio

Virol J· February 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Protocol to identify host-viral protein interactions between coagulation-related proteins and their genetic variants with SARS-CoV-2 proteins.
David D Holcomb, Katarzyna I Jankowska, Nancy Hernandez, Kyle Laurie, Jacob Kames, Michael DiCuccio

STAR Protoc· September 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage.
Douglas Meyer, Jacob Kames, Haim Bar, Anton A Komar, Aikaterini Alexaki, Michael DiCuccio

Genome Med· July 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
In Silico Evaluation of Cyclophilin Inhibitors as Potential Treatment for SARS-CoV-2.
Kyle Laurie, David Holcomb, Jacob Kames, Anton A Komar, Michael DiCuccio

Open Forum Infect Dis· June 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Gene variants of coagulation related proteins that interact with SARS-CoV-2.
David Holcomb, Aikaterini Alexaki, Nancy Hernandez, Ryan Hunt, Kyle Laurie, Michael DiCuccio

PLoS Comput Biol· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX.
Aikaterini Alexaki, Jacob Kames, Gaya K Hettiarachchi, John C Athey, Upendra K Katneni, Michael DiCuccio

F1000Res· February 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
Wenjun Li, Kathleen R O'Neill, Daniel H Haft, Michael DiCuccio, Vyacheslav Chetvernin

Nucleic Acids Res· January 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Coagulopathy and Thrombosis as a Result of Severe COVID-19 Infection: A Microvascular Focus.
Upendra K Katneni, Aikaterini Alexaki, Ryan C Hunt, Tal Schiller, Michael DiCuccio

Thromb Haemost· December 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Potential impact on coagulopathy of gene variants of coagulation related proteins that interact with SARS-CoV-2.
David Holcomb, Aikaterini Alexaki, Nancy Hernandez, Kyle Laurie, Jacob Kames, Michael DiCuccio

bioRxiv· September 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design.
Jacob Kames, David D Holcomb, Ofer Kimchi, Michael DiCuccio, Nobuko Hamasaki-Katagiri

Sci Rep· September 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design.
Jacob Kames, David D Holcomb, Ofer Kimchi, Michael DiCuccio, Nobuko Hamasaki-Katagiri

bioRxiv· March 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Effects of codon optimization on coagulation factor IX translation and structure: Implications for protein and gene therapies.
Aikaterini Alexaki, Gaya K Hettiarachchi, John C Athey, Upendra K Katneni, Vijaya Simhadri, Michael DiCuccio

Sci Rep· October 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Erratum: Mapping the global influence of published research on industry and innovation.
Osmat A Jefferson, Adam Jaffe, Doug Ashton, Ben Warren, Deniz Koellhofer, Michael DiCuccio

Nat Biotechnol· August 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Clinically significant pedicle screw malposition is an underestimated cause of radiculopathy.
Emily Jane Woo, Michael N DiCuccio

Spine J· July 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI.
Stacy Ciufo, Sivakumar Kannan, Shobha Sharma, Azat Badretdin, Karen Clark, Michael DiCuccio

Int J Syst Evol Microbiol· July 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
RefSeq: an update on prokaryotic genome annotation and curation.
Daniel H Haft, Michael DiCuccio, Azat Badretdin, Vyacheslav Brover, Vyacheslav Chetvernin

Nucleic Acids Res· January 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mapping the global influence of published research on industry and innovation.
Osmat A Jefferson, Adam Jaffe, Doug Ashton, Ben Warren, Deniz Koellhofer, Michael DiCuccio

Nat Biotechnol· January 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
NCBI prokaryotic genome annotation pipeline.
Tatiana Tatusova, Michael DiCuccio, Azat Badretdin, Vyacheslav Chetvernin, Eric P Nawrocki

Nucleic Acids Res· August 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis