Publications by authors named "Daniel L Bugembe"

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Uncovering the viral aetiology of undiagnosed acute febrile illness in Uganda using metagenomic sequencing.
Shirin Ashraf, Hanna Jerome, Daniel Lule Bugembe, Deogratius Ssemwanga, Timothy Byaruhanga

Nat Commun· March 2025

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Next-Generation Sequencing Reveals a High Frequency of HIV-1 Minority Variants and an Expanded Drug Resistance Profile among Individuals on First-Line ART.
Maria Nannyonjo, Jonah Omooja, Daniel Lule Bugembe, Nicholas Bbosa, Sandra Lunkuse

Viruses· September 2024

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HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis.
Alfred Ssekagiri, Daudi Jjingo, Nicholas Bbosa, Daniel L Bugembe, David P Kateete

Bioinform Adv· January 2024

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QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
Alfred Ssekagiri, Daudi Jjingo, Ibra Lujumba, Nicholas Bbosa, Daniel L Bugembe

Bioinform Adv· November 2022

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Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda.
Bailey Lubinski, Laura E Frazier, My V T Phan, Daniel L Bugembe, Jessie L Cunningham

Microbiol Spectr· August 2022

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Spike protein cleavage-activation mediated by the SARS-CoV-2 P681R mutation: a case-study from its first appearance in variant of interest (VOI) A.23.1 identified in Uganda.
Bailey Lubinski, Laura E Frazier, My V T Phan, Daniel L Bugembe, Jessie L Cunningham

bioRxiv· March 2022

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SARS-CoV-2 Variants, South Sudan, January-March 2021.
Daniel Lule Bugembe, My V T Phan, Abe G Abias, James Ayei, Lul Lojok Deng

Emerg Infect Dis· December 2021

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A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
Eduan Wilkinson, Marta Giovanetti, Houriiyah Tegally, James E San, Richard Lessells, Daniel L Bugembe

Science· October 2021

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Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda.
Daniel Lule Bugembe, My V T Phan, Isaac Ssewanyana, Patrick Semanda, Hellen Nansumba

Nat Microbiol· August 2021

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Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda.
Daniel Lule Bugembe, John Kayiwa, My V T Phan, Phiona Tushabe, Stephen Balinandi

Emerg Infect Dis· October 2020

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High Levels of Acquired HIV Drug Resistance Following Virological Nonsuppression in HIV-Infected Women from a High-Risk Cohort in Uganda.
Farouk Segujja, Jonah Omooja, Sandra Lunkuse, Maria Nanyonjo, Stella E Nabirye, Daniel L Bugembe

AIDS Res Hum Retroviruses· September 2020

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Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort.
Daniel Lule Bugembe, Andrew Obuku Ekii, Nicaise Ndembi, Jennifer Serwanga, Pontiano Kaleebu

BMC Infect Dis· February 2020

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Macrophage Inflammatory Protein-1 Beta and Interferon Gamma Responses in Ugandans with HIV-1 Acute/Early Infections.
Andrew Ekii Obuku, Daniel L Bugembe, Kenneth Musinguzi, Christine Watera, Jennifer Serwanga

AIDS Res Hum Retroviruses· March 2016

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