Publications by authors named "Daniel Newkirk"

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The effect of Nipped-B-like (Nipbl) haploinsufficiency on genome-wide cohesin binding and target gene expression: modeling Cornelia de Lange syndrome.
Daniel A Newkirk, Yen-Yun Chen, Richard Chien, Weihua Zeng, Jacob Biesinger

Clin Epigenetics· May 2018

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Genetic and epigenetic characteristics of FSHD-associated 4q and 10q D4Z4 that are distinct from non-4q/10q D4Z4 homologs.
Weihua Zeng, Yen-Yun Chen, Daniel A Newkirk, Beibei Wu, Judit Balog

Hum Mutat· August 2014

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Condensin I recruitment to base damage-enriched DNA lesions is modulated by PARP1.
Xiangduo Kong, Jared Stephens, Alexander R Ball, Jason T Heale, Daniel A Newkirk

PLoS One· February 2012

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AREM: aligning short reads from ChIP-sequencing by expectation maximization.
Daniel Newkirk, Jacob Biesinger, Alvin Chon, Kyoko Yokomori, Xiaohui Xie

J Comput Biol· November 2011

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Cohesin mediates chromatin interactions that regulate mammalian β-globin expression.
Richard Chien, Weihua Zeng, Shimako Kawauchi, M A Bender, Rosaysela Santos, Daniel A Newkirk

J Biol Chem· May 2011

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Fluorescence activated cell sorting (FACS) using RNAlater to minimize RNA degradation and perturbation of mRNA expression from cells involved in initial host microbe interactions.
Kevin P Nishimoto, Daniel Newkirk, Stephen Hou, John Fruehauf, Edward L Nelson

J Microbiol Methods· July 2007

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