Publications by authors named "Daniel Runcie"

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Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize.
Julia Engelhorn, Samantha J Snodgrass, Amelie Kok, Arun S Seetharam, Michael Schneider, Daniel E Runcie

Nat Genet· September 2025

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Integration of crop modeling and sensing into molecular breeding for nutritional quality and stress tolerance.
Jonathan Berlingeri, Abelina Fuentes, Earl Ranario, Heesup Yun, Ellen Y Rim, Daniel E Runcie

Theor Appl Genet· August 2025

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Expanding genomic prediction in plant breeding: harnessing big data, machine learning, and advanced software.
José Crossa, Johannes W R Martini, Paolo Vitale, Paulino Pérez-Rodríguez, Germano Costa-Neto, Daniel Runcie

Trends Plant Sci· July 2025

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Environmental data provide marginal benefit for predicting climate adaptation.
Forrest Li, Daniel J Gates, Edward S Buckler, Matthew B Hufford, Garrett M Janzen, Daniel E Runcie

PLoS Genet· June 2025

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Megavariate methods capture complex genotype-by-environment interactions.
Alencar Xavier, Daniel Runcie, David Habier

Genetics· April 2025

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Why usefulness is rarely useful.
Fangyi Wang, Mitchell J Feldmann, Daniel E Runcie

G3 (Bethesda)· March 2025

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Machine learning algorithms translate big data into predictive breeding accuracy.
José Crossa, Osval A Montesinos-Lopez, Germano Costa-Neto, Paolo Vitale, Johannes W R Martini, Daniel Runcie

Trends Plant Sci· February 2025

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Global genotype by environment prediction competition reveals that diverse modeling strategies can deliver satisfactory maize yield estimates.
Jacob D Washburn, José Ignacio Varela, Alencar Xavier, Qiuyue Chen, David Ertl, Daniel E Runcie

Genetics· February 2025

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MegaLMM improves genomic predictions in new environments using environmental covariates.
Haixiao Hu, Renaud Rincent, Daniel E Runcie

Genetics· January 2025

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Exploring a Bayesian sparse factor model-based strategy for the genetic analysis of thousands of mid-infrared spectra traits for animal breeding.
Yansen Chen, Hadi Atashi, Jiayi Qu, Pauline Delhez, Daniel Runcie

J Dairy Sci· November 2024

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Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates.
Jacob D Washburn, José Ignacio Varela, Alencar Xavier, Qiuyue Chen, David Ertl, Daniel E Runcie

bioRxiv· September 2024

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High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions.
Baber Ali, Bertrand Huguenin-Bizot, Maxime Laurent, François Chaumont, Laurie C Maistriaux, Daniel Runcie

Theor Appl Genet· July 2024

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Exploring the molecular regulation of vernalization-induced flowering synchrony in Arabidopsis.
Po-Kai Huang, Johanna Schmitt, Daniel E Runcie

New Phytol· May 2024

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Two teosintes made modern maize.
Ning Yang, Yuebin Wang, Xiangguo Liu, Minliang Jin, Miguel Vallebueno-Estrada, Daniel Runcie

Science· December 2023

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Improving predictive ability in sparse testing designs in soybean populations.
Reyna Persa, Caio Canella Vieira, Esteban Rios, Valerio Hoyos-Villegas, Carlos D Messina, Daniel Runcie

Front Genet· November 2023

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Mega-scale Bayesian regression methods for genome-wide prediction and association studies with thousands of traits.
Jiayi Qu, Daniel Runcie, Hao Cheng

Genetics· March 2023

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Allele-specific Expression Reveals Multiple Paths to Highland Adaptation in Maize.
Haixiao Hu, Taylor Crow, Saghi Nojoomi, Aimee J Schulz, Juan M Estévez-Palmas, Daniel E Runcie

Mol Biol Evol· November 2022

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Multi-Trait Genomic Prediction Improves Accuracy of Selection among Doubled Haploid Lines in Maize.
Haixiao Hu, Yujie Meng, Wenxin Liu, Shaojiang Chen, Daniel E Runcie

Int J Mol Sci· November 2022

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Maintenance of quantitative genetic variance in complex, multitrait phenotypes: the contribution of rare, large effect variants in 2 Drosophila species.
Emma Hine, Daniel E Runcie, Scott L Allen, Yiguan Wang, Stephen F Chenoweth

Genetics· September 2022

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An adaptive teosinte introgression modulates phosphatidylcholine levels and is associated with maize flowering time.
Allison C Barnes, Fausto Rodríguez-Zapata, Karla A Juárez-Núñez, Daniel J Gates, Garrett M Janzen, Daniel Runcie

Proc Natl Acad Sci U S A· July 2022

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Demonstration of local adaptation in maize landraces by reciprocal transplantation.
Garrett M Janzen, María Rocío Aguilar-Rangel, Carolina Cíntora-Martínez, Karla Azucena Blöcher-Juárez, Eric González-Segovia, Daniel E Runcie

Evol Appl· May 2022

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Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci.
Sarah G Odell, Asher I Hudson, Sébastien Praud, Pierre Dubreuil, Marie-Hélène Tixier, Daniel E Runcie

G3 (Bethesda)· March 2022

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Analysis of genotype-by-environment interactions in a maize mapping population.
Asher I Hudson, Sarah G Odell, Pierre Dubreuil, Marie-Helene Tixier, Sebastien Praud, Daniel E Runcie

G3 (Bethesda)· March 2022

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Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations.
Haixiao Hu, Malachy T Campbell, Trevor H Yeats, Xuying Zheng, Daniel E Runcie

Theor Appl Genet· December 2021

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Corrigendum to: "Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars".
Dominique D A Pincot, Mirko Ledda, Mitchell J Feldmann, Michael A Hardigan, Thomas J Poorten, Daniel E Runcie

G3 (Bethesda)· September 2021

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