Publications by authors named "Dave Baker"

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Hologenomic analysis of rectal mucus sampling for detection of adenomatous polyps and colorectal cancer.
Andrew J Tock, Kamrun S Patel, Emma Morales-Walker, Linglan Zhang, Chris Orthodoxou, Dave J Baker

Nat Commun· December 2025

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Genomic insights into ST85 and ST158 belonging to recently emerged global clones of multidrug-resistant Acinetobacter baumannii isolates from Egypt: in vitro assessment of repurposed drug-antibiotic combinations.
Mona S El Far, Mervat A Kassem, Eva A Edward, Benjamin A Evans, Dave J Baker

Ann Clin Microbiol Antimicrob· November 2025

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Genome sequence of AM6, isolated from a Parkinson's disease patient.
Madhav Kumar, Lizbeth Sayavedra, Dave J Baker, Yogesh S Shouche, Arjan Narbad

Microbiol Resour Announc· April 2025

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The nisin O cluster: species dissemination, candidate leader peptide proteases and the role of regulatory systems.
Jacob Scadden, Rebecca Ansorge, Stefano Romano, Andrea Telatin, Dave J Baker

Microbiology (Reading)· February 2025

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Assessing Bias and Reproducibility of Viral Metagenomics Methods for the Combined Detection of Faecal RNA and DNA Viruses.
Rik Haagmans, Oliver J Charity, Dave Baker, Andrea Telatin, George M Savva

Viruses· January 2025

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A One Health Perspective on Salmonella enterica Serovar Infantis, an Emerging Human Multidrug-Resistant Pathogen.
Jennifer Mattock, Marie Anne Chattaway, Hassan Hartman, Timothy J Dallman, Anthony M Smith, Dave J Baker

Emerg Infect Dis· April 2024

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Induced prophages detected from the hemoculture: a biomarker for infection.
Patoo Withatanung, Sujintana Janesomboon, Muthita Vanaporn, Veerachat Muangsombut, Sorujsiri Charoensudjai, Dave J Baker

Front Microbiol· April 2024

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Nanopore and Illumina sequencing reveal different viral populations from human gut samples.
Ryan Cook, Andrea Telatin, Shen-Yuan Hsieh, Fiona Newberry, Mohammad A Tariq, Dave J Baker

Microb Genom· April 2024

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Identification, activity and delivery of new LysFA67 endolysin to target cheese spoilage Clostridium tyrobutyricum.
Carmen Sánchez, Sonia Garde, José María Landete, Javier Calzada, Dave J Baker

Food Microbiol· February 2024

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Identification of Campylobacter jejuni and Campylobacter coli genes contributing to oxidative stress response using TraDIS analysis.
Emily Stoakes, Xuanlin Chen, Lajos Kalmar, Dave Baker, Rhiannon Evans

BMC Microbiol· February 2024

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Differential temporal release and lipoprotein loading in B. thetaiotaomicron bacterial extracellular vesicles.
Rokas Juodeikis, Carlo Martins, Gerhard Saalbach, Jake Richardson, Todor Koev, Dave J Baker

J Extracell Vesicles· January 2024

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Genomic characterization of colistin-resistant Klebsiella pneumoniae isolated from intensive care unit patients in Egypt.
Eriny T Attalla, Amal M Khalil, Azza S Zakaria, Dave J Baker, Nelly M Mohamed

Ann Clin Microbiol Antimicrob· September 2023

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An efficient method for high molecular weight bacterial DNA extraction suitable for shotgun metagenomics from skin swabs.
Iliana R Serghiou, Dave Baker, Rhiannon Evans, Matthew J Dalby, Raymond Kiu

Microb Genom· July 2023

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Highly drug resistant clone of Salmonella Kentucky ST198 in clinical infections and poultry in Zimbabwe.
Tapfumanei Mashe, Gaetan Thilliez, Blessmore V Chaibva, Pimlapas Leekitcharoenphon, Matt Bawn, Dave Baker

NPJ Antimicrob Resist· June 2023

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Application of TraDIS to define the core essential genome of Campylobacter jejuni and Campylobacter coli.
Emily Stoakes, Keith Turner, Dave J Baker, Maria Suau Sans, Muhammad Yasir

BMC Microbiol· April 2023

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Metagenomic investigation of the equine faecal microbiome reveals extensive taxonomic diversity.
Rachel Gilroy, Joy Leng, Anuradha Ravi, Evelien M Adriaenssens, Aharon Oren, Dave Baker

PeerJ· January 2023

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A multi-site prospective, observational study of physiotherapist independent prescribing activity across musculoskeletal clinics in the United Kingdom.
Tim Noblet, Feroz Jadhakhan, Andrew Bennett, Carol McCrum, Simon O'Shea, Dave Baker

Musculoskelet Sci Pract· October 2022

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Genomic Analysis of Carbapenem-Resistant in Water Matrices: Implications for Public Health and Wastewater Treatments.
Sopheak Hem, Ethan R Wyrsch, Barbara Drigo, Dave J Baker, Ian G Charles

Appl Environ Microbiol· July 2022

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MdaB and NfrA, Two Novel Reductases Important in the Survival and Persistence of the Major Enteropathogen Campylobacter jejuni.
Fauzy Nasher, Aidan J Taylor, Abdi Elmi, Burhan Lehri, Umer Z Ijaz, Dave Baker

J Bacteriol· January 2022

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Genomic comparisons of ST131 from Australia.
Dmitriy Li, Ethan R Wyrsch, Paarthiphan Elankumaran, Monika Dolejska, Marc S Marenda, Dave Baker

Microb Genom· December 2021

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Genomic analysis of species from aquatic environments: Evidence for potential clinical transmission.
Sopheak Hem, Veronica M Jarocki, Dave J Baker, Ian G Charles, Barbara Drigo

Curr Res Microb Sci· November 2021

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Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.
Rachel Gilroy, Anuradha Ravi, Maria Getino, Isabella Pursley, Daniel L Horton, Dave Baker

PeerJ· April 2021

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CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes.
Dave J Baker, Alp Aydin, Thanh Le-Viet, Gemma L Kay, Steven Rudder

Genome Med· February 2021

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Surface runoff and tile drainage transport of phosphorus in the midwestern United States.
Douglas R Smith, Kevin W King, Laura Johnson, Wendy Francesconi, Pete Richards, Dave Baker

J Environ Qual· March 2015

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Optimizing TILLING populations for reverse genetics in Medicago truncatula.
Christine Le Signor, Vincent Savois, Grégoire Aubert, Jérôme Verdier, Marie Nicolas, Dave Baker

Plant Biotechnol J· June 2009

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