Publications by authors named "David Burks"

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R
RNA Sequencing Experimental Analysis Workflow Using Caenorhabditis elegans.
Jose Robledo, Saifun Ripa Nahar, Manuel A Ruiz, Raymond J Hendricks, David J Burks

Methods Mol Biol· July 2024

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Diagnostic Outcomes of Concurrent DNA and RNA Sequencing in Individuals Undergoing Hereditary Cancer Testing.
Carolyn Horton, Lily Hoang, Heather Zimmermann, Colin Young, Jessica Grzybowski, David Burks

JAMA Oncol· February 2024

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Benchmarking RNA-Seq Aligners at Base-Level and Junction Base-Level Resolution Using the Genome.
Tallon Coxe, David J Burks, Utkarsh Singh, Ron Mittler, Rajeev K Azad

Plants (Basel)· February 2024

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The OsTIL1 lipocalin protects cell membranes from reactive oxygen species damage and maintains the 18:3-containing glycerolipid biosynthesis under cold stress in rice.
Lingxiao Ji, Zhengfeng Zhang, Shuang Liu, Liyan Zhao, Qiang Li, David J Burks

Plant J· January 2024

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POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling.
David J Burks, Vaidehi Pusadkar, Rajeev K Azad

Environ Microbiome· March 2023

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Evaluation of pathways to the -glycosyl isoflavone puerarin in roots of kudzu ().
Laci M Adolfo, David Burks, Xiaolan Rao, Anislay Alvarez-Hernandez, Richard A Dixon

Plant Direct· September 2022

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Mapping Strengths and Weaknesses of Different Clustering Approaches to Deciphering Bacterial Chimerism.
David J Burks, Rajeev K Azad

OMICS· August 2022

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Mutational and splicing landscape in a cohort of 43,000 patients tested for hereditary cancer.
Carolyn Horton, Ashley Cass, Blair R Conner, Lily Hoang, Heather Zimmermann, David Burks

NPJ Genom Med· August 2022

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Analysis of transcribed sequences from young and mature zebrafish thrombocytes.
Weam Fallatah, Ronika De, David Burks, Rajeev K Azad, Pudur Jagadeeswaran

PLoS One· April 2022

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The gene co-expression network.
David J Burks, Soham Sengupta, Ronika De, Ron Mittler, Rajeev K Azad

Plant Direct· April 2022

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RNA-Seq Data Analysis Pipeline for Plants: Transcriptome Assembly, Alignment, and Differential Expression Analysis.
David J Burks, Rajeev K Azad

Methods Mol Biol· December 2021

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Role of ribosomal RNA released from red cells in blood coagulation in zebrafish and humans.
Abdulmajeed Alharbi, Neha Iyer, Ayah Al Qaryoute, Revathi Raman, David J Burks

Blood Adv· November 2021

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MYB30 Orchestrates Systemic Reactive Oxygen Signaling and Plant Acclimation.
Yosef Fichman, Sara I Zandalinas, Soham Sengupta, David Burks, Ronald J Myers

Plant Physiol· October 2020

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Higher-order Markov models for metagenomic sequence classification.
David J Burks, Rajeev K Azad

Bioinformatics· August 2020

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Lipophilic signals lead to organ-specific gene expression changes in seedlings.
Ashley E Cannon, Chengshi Yan, David J Burks, Xiaolan Rao, Rajeev K Azad

Plant Direct· July 2020

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Proactive interference apraxic agraphia: a writing and drawing disorder associated with corticobasal syndrome.
Parunyou Julayanont, David W Burks, Kenneth M Heilman

Neurocase· June 2020

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Expression of a dominant-negative AtNEET-H89C protein disrupts iron-sulfur metabolism and iron homeostasis in Arabidopsis.
Sara I Zandalinas, Luhua Song, Soham Sengupta, Samuel A McInturf, DeAna G Grant, David Burks

Plant J· March 2020

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The genome of jojoba (): A taxonomically isolated species that directs wax ester accumulation in its seeds.
Drew Sturtevant, Shaoping Lu, Zhi-Wei Zhou, Yin Shen, Shuo Wang, David J Burks

Sci Adv· March 2020

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Vertical and Radial Attentional Neglect in Corticobasal Syndrome.
Parunyou Julayanont, David W Burks, Kenneth M Heilman

Cogn Behav Neurol· September 2019

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Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light.
Sara I Zandalinas, Soham Sengupta, David Burks, Rajeev K Azad, Ron Mittler

Plant J· April 2019

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The Medicago truncatula Genome: Genomic Data Availability.
David Burks, Rajeev Azad, Jiangqi Wen, Rebecca Dickstein

Methods Mol Biol· March 2019

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Tissue-specific differences in metabolites and transcripts contribute to the heterogeneity of ricinoleic acid accumulation in Ricinus communis L. (castor) seeds.
Drew Sturtevant, Trevor B Romsdahl, Xiao-Hong Yu, David J Burks, Rajeev K Azad

Metabolomics· January 2019

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Environmental vibrios represent a source of antagonistic compounds that inhibit pathogenic Vibrio cholerae and Vibrio parahaemolyticus strains.
David J Burks, Stephen Norris, Kathryn M Kauffman, Abigail Joy, Philip Arevalo

Microbiologyopen· October 2017

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Identification and Network-Enabled Characterization of Auxin Response Factor Genes in .
David J Burks, Rajeev K Azad

Front Plant Sci· December 2016

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Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans.
Mary L Ladage, Skylar D King, David J Burks, Daniel L Quan, Anastacia M Garcia

G3 (Bethesda)· October 2016

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