Publications by authors named "David Cleary"

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The Road Less Traveled: Exploring the Genomic Characteristics and Antimicrobial Resistance Potential of Acinetobacter baumannii From the Indigenous Orang Asli Community in Peninsular Malaysia.
Soo-Sum Lean, Denise E Morris, Rebecca Anderson, Ahmed Ghazi Alattraqchi, David W Cleary

Microbiologyopen· October 2025

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Prevalence of pneumococcal carriage and risk factors for pneumonia and carriage among under-5 children in Malaysia: findings from the MY-Pneumo study.
Hoomashini Gunasegaran, Nurul Hanis Ramzi, Andrew Chun Hoong Tan, Nur Alia Johari, Anna Marie Nathan, David W Cleary

Pneumonia (Nathan)· October 2025

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Changes in carriage and serotype diversity of Streptococcus pneumoniae and other respiratory pathobionts in the UK between pre-PCV13 (2006-10), early-PCV13 (2010-12) and late-PCV13 (2012-23) periods.
David W Cleary, Rebecca Anderson, Jessica Jones, Rebecca A Gladstone, Karen L Osman

Pneumonia (Nathan)· September 2025

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Dysbiosis in the upper airway and gut, and altered urine metabolome in Malaysian diabetic patients.
Chin-Lee Ting, Zhi-Xian Kong, Nur Alia Binti Johari, Cindy Shuan-Ju Teh, Ivan Kok-Seng Yap, David William Cleary

J Endocrinol· September 2025

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From bedside to bug side: clinical, haematological and genetic markers of antibiotic-resistant bacterial isolates from children admitted with sepsis in Kaduna State, Nigeria - a protocol for a cross-sectional study.
Sani Musa, Shamsudin Aliyu, Nuruddeen Bida Abdullahi, Hajara Lawal Khalid, Sadiq Kwaifa Salihu, David W Cleary

BMJ Open· September 2025

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Controlled human infection model of Neisseria lactamica in late pregnancy investigating mother-to-infant transmission in the UK: a single-arm pilot trial.
Anastasia A Theodosiou, Debby Bogaert, David W Cleary, Adam P Dale, Diane F Gbesemete

Lancet Microbe· April 2025

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Whole-genome sequencing of clinical isolates from a tertiary hospital in Terengganu, Malaysia (2011-2020), revealed the predominance of the Global Clone 2 lineage.
Nurul Saidah Din, Farahiyah Mohd Rani, Ahmed Ghazi Alattraqchi, Salwani Ismail, Nor Iza A Rahman, David W Cleary

Microb Genom· February 2025

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Non-pharmaceutical interventions for COVID-19 transiently reduced pneumococcal and carriage in a cross-sectional pediatric cohort in Southampton, UK.
David W Cleary, James Campling, Maria Lahuerta, Kyla Hayford, Jo Southern

Microbiol Spectr· August 2024

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Microbiome alterations are associated with apolipoprotein E mutation in and humans with Alzheimer's disease.
Guido Zampieri, Léa Cabrol, Claudio Urra, Eduardo Castro-Nallar, Guillaume Schwob, David Cleary

iScience· August 2024

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Multicentre case-control study of pneumococcal infections among children with pneumonia in Peninsular Malaysia (MY-Pneumo): a study protocol.
Nurul Hanis Ramzi, Andrew Tan Chun Hoong, Nur Alia Johari, Anna Marie Nathan, Cindy Shuan Ju Teh, David W Cleary

BMC Public Health· August 2024

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Respiratory carriage of hypervirulent Klebsiella pneumoniae by indigenous populations of Malaysia.
Souradeep Das, Anish K Pandey, Denise E Morris, Rebecca Anderson, Victor Lim, David W Cleary

BMC Genomics· April 2024

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Oral and gut microbial biomarkers of susceptibility to respiratory tract infection in adults: A feasibility study.
Claire A Woodall, Ashley Hammond, David Cleary, Andrew Preston, Peter Muir

Heliyon· August 2023

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A brief history of and future prospects for pneumococcal vaccination in Malaysia.
Alex J J Lister, Evelin Dombay, David W Cleary, Lokman H Sulaiman, Stuart C Clarke

Pneumonia (Nathan)· August 2023

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Comparative genomic epidemiology of serotype 3 IPD and carriage isolates from Southampton, UK between 2005 and 2017.
David W Cleary, Stephanie W Lo, Narender Kumar, Stephen D Bentley, Saul N Faust

Microb Genom· March 2023

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Comparative genomic analysis of clinical Acinetobacter nosocomialis isolates from Terengganu, Malaysia led to the discovery of a novel tetracycline-resistant plasmid.
Farahiyah Mohd Rani, Soo Sum Lean, Nor Iza A Rahman, Salwani Ismail, Ahmed Ghazi Alattraqchi, David W Cleary

J Glob Antimicrob Resist· December 2022

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Impact of bacterial strain acquisition in the lung of patients with COPD: the AERIS study.
Lucio Malvisi, Aparna Yarraguntla, Marie-Cécile Mortier, Karen Osman, David W Cleary

Infect Dis (Lond)· November 2022

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Nontypeable Haemophilus influenzae infection of pulmonary macrophages drives neutrophilic inflammation in severe asthma.
Jodie Ackland, Clair Barber, Ashley Heinson, Adnan Azim, David W Cleary

Allergy· October 2022

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Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018.
David W Cleary, Jessica Jones, Rebecca A Gladstone, Karen L Osman, Vanessa T Devine

Sci Rep· August 2022

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Controlled human infection with in late pregnancy to measure horizontal transmission and microbiome changes in mother-neonate pairs: a single-arm interventional pilot study protocol.
Anastasia A Theodosiou, Jay R Laver, Adam P Dale, David W Cleary, Christine E Jones

BMJ Open· May 2022

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The characterization of carried in the general population.
Denise E Morris, Karen L Osman, David W Cleary, Stuart C Clarke

Microb Genom· May 2022

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Draft Genome Sequences of Two Acinetobacter soli Clinical Isolates from a Tertiary Hospital in Terengganu, Malaysia.
Farahiyah Mohd Rani, Nor Iza A Rahman, Salwani Ismail, David W Cleary, Stuart C Clarke

Microbiol Resour Announc· April 2022

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An inducible transposon mutagenesis approach for the intracellular human pathogen .
Colette E O'Neill, Rachel J Skilton, Jade Forster, David W Cleary, Sarah A Pearson

Wellcome Open Res· November 2021

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Dual RNASeq Reveals NTHi-Macrophage Transcriptomic Changes During Intracellular Persistence.
Jodie Ackland, Ashley I Heinson, David W Cleary, Myron Christodoulides, Tom M A Wilkinson

Front Cell Infect Microbiol· October 2021

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A recombinant commensal bacteria elicits heterologous antigen-specific immune responses during pharyngeal carriage.
Jay R Laver, Diane Gbesemete, Adam P Dale, Zoe C Pounce, Carl N Webb, David W Cleary

Sci Transl Med· July 2021

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