Publications by authors named "David Dulin"

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Incorporation of arabinose-CTP and arabinose-UTP inhibit viral polymerases by inducing long pauses.
Ziyang Xiao, Arnab Das, Abha Jain, Thomas K Anderson, Craig E Cameron, David Dulin

J Biol Chem· December 2025

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Template switching by coronavirus polymerase requires helicase activity and is stimulated by remdesivir and molnupiravir.
Asif Rakib, Arnab Das, Subhas C Bera, Pim P B America, Misha Klein, David Dulin

bioRxiv· October 2025

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The 2'-endo conformation of arabinose-CTP and arabinose-UTP inhibit viral polymerases by inducing long pauses.
Ziyang Xiao, Arnab Das, Abha Jain, Thomas K Anderson, Craig E Cameron, David Dulin

bioRxiv· September 2025

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Entropy-based super-resolution imaging in waveguide-based TIRF microscopy-an experimental and numerical study.
Chunyu Lu, Mohammad Talebi Khoshmehr, Mohammad Sadegh Feiz, Mahdi Mozdoor Dashtabi, David Dulin

Opt Express· July 2025

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RNA virus polymerase-helicase coupling enables rapid elongation through duplex RNA.
Pim P B America, Subhas C Bera, Arnab Das, Thomas K Anderson, John C Marecki, David Dulin

bioRxiv· June 2025

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A post-assembly conformational change makes the SARS-CoV-2 polymerase elongation-competent.
Misha Klein, Arnab Das, Subhas C Bera, Thomas K Anderson, Dana Kocincova, David Dulin

Nucleic Acids Res· May 2025

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A post-assembly conformational change makes the SARS-CoV-2 polymerase elongation-competent.
Misha Klein, Arnab Das, Subhas C Bera, Thomas K Anderson, Dana Kocincova, David Dulin

bioRxiv· January 2025

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Temperature-Dependent Twist of Double-Stranded RNA Probed by Magnetic Tweezer Experiments and Molecular Dynamics Simulations.
Hana Dohnalová, Mona Seifert, Eva Matoušková, Misha Klein, Flávia S Papini, David Dulin

J Phys Chem B· January 2024

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Surface Functionalization, Nucleic Acid Tether Characterization, and Force Calibration for a Magnetic Tweezers Assay.
Salina Quack, David Dulin

Methods Mol Biol· November 2023

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An Introduction to Magnetic Tweezers.
David Dulin

Methods Mol Biol· October 2023

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Interfering with nucleotide excision by the coronavirus 3'-to-5' exoribonuclease.
Rukesh Chinthapatla, Mohamad Sotoudegan, Pankaj Srivastava, Thomas K Anderson, Ibrahim M Moustafa, David Dulin

Nucleic Acids Res· January 2023

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Interfering with nucleotide excision by the coronavirus 3'-to-5' exoribonuclease.
Rukesh Chinthapatla, Mohamad Sotoudegan, Thomas Anderson, Ibrahim M Moustafa, Kellan T Passow, David Dulin

bioRxiv· August 2022

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Quantitative parameters of bacterial RNA polymerase open-complex formation, stabilization and disruption on a consensus promoter.
Subhas C Bera, Pim P B America, Santeri Maatsola, Mona Seifert, Eugeniu Ostrofet, David Dulin

Nucleic Acids Res· July 2022

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Real-Time Single-Molecule Studies of RNA Polymerase-Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway.
Anssi M Malinen, Jacob Bakermans, Emil Aalto-Setälä, Martin Blessing, David L V Bauer, David Dulin

J Mol Biol· January 2022

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The nucleotide addition cycle of the SARS-CoV-2 polymerase.
Subhas Chandra Bera, Mona Seifert, Robert N Kirchdoerfer, Pauline van Nies, Yibulayin Wubulikasimu, David Dulin

Cell Rep· August 2021

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Inhibition of SARS-CoV-2 polymerase by nucleotide analogs: a single molecule perspective.
Mona Seifert, Subhas Chandra Bera, Pauline van Nies, Robert N Kirchdoerfer, Ashleigh Shannon, David Dulin

bioRxiv· April 2021

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The nucleotide addition cycle of the SARS-CoV-2 polymerase.
Subhas Chandra Bera, Mona Seifert, Robert N Kirchdoerfer, Pauline van Nies, Yibulayin Wubulikasimu, David Dulin

bioRxiv· March 2021

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High spatiotemporal resolution data from a custom magnetic tweezers instrument.
Eugeniu Ostrofet, Flávia S Papini, David Dulin

Data Brief· June 2020

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Temperature controlled high-throughput magnetic tweezers show striking difference in activation energies of replicating viral RNA-dependent RNA polymerases.
Mona Seifert, Pauline van Nies, Flávia S Papini, Jamie J Arnold, Minna M Poranen, David Dulin

Nucleic Acids Res· June 2020

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High-yield fabrication of DNA and RNA constructs for single molecule force and torque spectroscopy experiments.
Flávia S Papini, Mona Seifert, David Dulin

Nucleic Acids Res· December 2019

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[High throughput magnetic tweezers to characterize inhibitors of RNA virus replication].
David Dulin

Virologie (Montrouge)· December 2019

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Author Correction: Correction-free force calibration for magnetic tweezers experiments.
Eugen Ostrofet, Flávia Stal Papini, David Dulin

Sci Rep· December 2018

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Correction-free force calibration for magnetic tweezers experiments.
Eugen Ostrofet, Flávia Stal Papini, David Dulin

Sci Rep· October 2018

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Publisher's Note: Biological Magnetometry: Torque on Superparamagnetic Beads in Magnetic Fields [Phys. Rev. Lett. 114, 218301 (2015)].
Maarten M van Oene, Laura E Dickinson, Francesco Pedaci, Mariana Köber, David Dulin

Phys Rev Lett· June 2018

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