Publications by authors named "Anssi M Malinen"

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A kinetic ruler controls mRNA poly(A) tail length.
Emilie Gabs, Emil Aalto-Setälä, Aada Välisaari, Anssi M Malinen, Torben Heick Jensen

Genes Dev· November 2025

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Aflatoxin biosynthesis regulators AflR and AflS: DNA binding affinity, stoichiometry, and kinetics.
Asmaa Abbas, Ranjit K Prajapati, Emil Aalto-Setälä, Alexander A Baykov, Anssi M Malinen

Biochem J· June 2024

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Functional and structural asymmetry suggest a unifying principle for catalysis in membrane-bound pyrophosphatases.
Jannik Strauss, Craig Wilkinson, Keni Vidilaseris, Orquidea M de Castro Ribeiro, Jianing Liu, Anssi M Malinen

EMBO Rep· February 2024

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Pre-steady-state kinetics and solvent isotope effects support the "billiard-type" transport mechanism in Na -translocating pyrophosphatase.
Anssi M Malinen, Viktor A Anashkin, Victor N Orlov, Alexander V Bogachev, Reijo Lahti

Protein Sci· September 2022

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The Mechanism of Energy Coupling in H/Na-Pumping Membrane Pyrophosphatase-Possibilities and Probabilities.
Alexander A Baykov, Viktor A Anashkin, Anssi M Malinen, Alexander V Bogachev

Int J Mol Sci· August 2022

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Quantitative parameters of bacterial RNA polymerase open-complex formation, stabilization and disruption on a consensus promoter.
Subhas C Bera, Pim P B America, Santeri Maatsola, Mona Seifert, Eugeniu Ostrofet, Anssi M Malinen

Nucleic Acids Res· July 2022

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A methanolic extract of Zanthoxylum bungeanum modulates secondary metabolism regulator genes in Aspergillus flavus and shuts down aflatoxin production.
Asmaa Abbas, Colin W Wright, Nagwa El-Sawi, Tapani Yli-Mattila, Anssi M Malinen

Sci Rep· April 2022

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Real-Time Single-Molecule Studies of RNA Polymerase-Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway.
Anssi M Malinen, Jacob Bakermans, Emil Aalto-Setälä, Martin Blessing, David L V Bauer

J Mol Biol· January 2022

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Catalytic Asymmetry in Homodimeric H-Pumping Membrane Pyrophosphatase Demonstrated by Non-Hydrolyzable Pyrophosphate Analogs.
Viktor A Anashkin, Anssi M Malinen, Alexander V Bogachev, Alexander A Baykov

Int J Mol Sci· September 2021

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Good-Practice Non-Radioactive Assays of Inorganic Pyrophosphatase Activities.
Alexander A Baykov, Viktor A Anashkin, Anssi M Malinen

Molecules· April 2021

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Oxazinomycin arrests RNA polymerase at the polythymidine sequences.
Ranjit K Prajapati, Petja Rosenqvist, Kaisa Palmu, Janne J Mäkinen, Anssi M Malinen

Nucleic Acids Res· November 2019

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The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp.
Diego Duchi, Abhishek Mazumder, Anssi M Malinen, Richard H Ebright, Achillefs N Kapanidis

Nucleic Acids Res· August 2018

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Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria.
David Dulin, David L V Bauer, Anssi M Malinen, Jacob J W Bakermans, Martin Kaller

Nat Commun· April 2018

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Role of the potassium/lysine cationic center in catalysis and functional asymmetry in membrane-bound pyrophosphatases.
Erika Artukka, Heidi H Luoto, Alexander A Baykov, Reijo Lahti, Anssi M Malinen

Biochem J· March 2018

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Two independent evolutionary routes to Na+/H+ cotransport function in membrane pyrophosphatases.
Erika Nordbo, Heidi H Luoto, Alexander A Baykov, Reijo Lahti, Anssi M Malinen

Biochem J· October 2016

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Monitoring translocation of multisubunit RNA polymerase along the DNA with fluorescent base analogues.
Anssi M Malinen, Matti Turtola, Georgiy A Belogurov

Methods Mol Biol· October 2015

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Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase.
Maria S Muntyan, Dmitry A Cherepanov, Anssi M Malinen, Dmitry A Bloch, Dimitry Y Sorokin

Proc Natl Acad Sci U S A· June 2015

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Evolutionarily divergent, Na+-regulated H+-transporting membrane-bound pyrophosphatases.
Heidi H Luoto, Erika Nordbo, Anssi M Malinen, Alexander A Baykov, Reijo Lahti

Biochem J· April 2015

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CBR antimicrobials alter coupling between the bridge helix and the β subunit in RNA polymerase.
Anssi M Malinen, Monali Nandymazumdar, Matti Turtola, Henri Malmi, Thadee Grocholski

Nat Commun· March 2014

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Membrane Na+-pyrophosphatases can transport protons at low sodium concentrations.
Heidi H Luoto, Erika Nordbo, Alexander A Baykov, Reijo Lahti, Anssi M Malinen

J Biol Chem· December 2013

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Pyrophosphate-fueled Na+ and H+ transport in prokaryotes.
Alexander A Baykov, Anssi M Malinen, Heidi H Luoto, Reijo Lahti

Microbiol Mol Biol Rev· June 2013

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Membrane-integral pyrophosphatase subfamily capable of translocating both Na+ and H+.
Heidi H Luoto, Alexander A Baykov, Reijo Lahti, Anssi M Malinen

Proc Natl Acad Sci U S A· January 2013

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Active site opening and closure control translocation of multisubunit RNA polymerase.
Anssi M Malinen, Matti Turtola, Marimuthu Parthiban, Lioudmila Vainonen, Mark S Johnson

Nucleic Acids Res· August 2012

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Na+-translocating membrane pyrophosphatases are widespread in the microbial world and evolutionarily precede H+-translocating pyrophosphatases.
Heidi H Luoto, Georgiy A Belogurov, Alexander A Baykov, Reijo Lahti, Anssi M Malinen

J Biol Chem· June 2011

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Mutual effects of cationic ligands and substrate on activity of the Na+-transporting pyrophosphatase of Methanosarcina mazei.
Anssi M Malinen, Alexander A Baykov, Reijo Lahti

Biochemistry· December 2008

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