Publications by authors named "David Henke"

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Strain-Specific Variability in Viral Kinetics, Cytokine Response, and Cellular Damage in Air-Liquid Cultures of Human Nasal Organoids After Infection with SARS-CoV-2.
Gina M Aloisio, Trevor J McBride, Letisha Aideyan, Emily M Schultz, Ashley M Murray, David Henke

Viruses· October 2025

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Complete genomic characterization of global pathogens respiratory syntical virus and human norovirus using probe based capture enrichment.
Sravya V Bhamidipati, Anil Surathu, Hsu Chao, Daniel P Agustinho, Qin Xiang, David Henke

Sci Rep· July 2025

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Bio-primed machine learning to enhance discovery of relevant biomarkers.
David M Henke, Alexander Renwick, Joseph R Zoeller, Jitendra K Meena, Nicholas J Neill

NPJ Precis Oncol· February 2025

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Infant-derived human nasal organoids exhibit relatively increased susceptibility, epithelial responses, and cytotoxicity during RSV infection.
Gina M Aloisio, Divya Nagaraj, Ashley M Murray, Emily M Schultz, Trevor McBride, David Henke

J Infect· December 2024

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Examining intra-host genetic variation of RSV by short read high-throughput sequencing.
David Henke, Felipe-Andrés Piedra, Vasanthi Avadhanula, Harsha Doddapaneni, Donna M Muzny

bioRxiv· September 2024

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Complete Genomic Characterization of Global Pathogens, Respiratory Syncytial Virus (RSV), and Human Norovirus (HuNoV) Using Probe-based Capture Enrichment.
Sravya V Bhamidipati, Anil Surathu, Hsu Chao, Daniel P Agustinho, Qin Xiang, David Henke

bioRxiv· September 2024

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Pediatric human nose organoids demonstrate greater susceptibility, epithelial responses, and cytotoxicity than adults during RSV infection.
Gina M Aloisio, Divya Nagaraj, Ashley M Murray, Emily M Schultz, Trevor McBride, David Henke

bioRxiv· February 2024

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Wastewater sequencing reveals community and variant dynamics of the collective human virome.
Michael Tisza, Sara Javornik Cregeen, Vasanthi Avadhanula, Ping Zhang, Tulin Ayvaz, David Henke

Nat Commun· October 2023

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Microbial fingerprints reveal interaction between museum objects, curators, and visitors.
Lukas M Simon, Cecilia Flocco, Franziska Burkart, Anika Methner, David Henke

iScience· September 2023

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Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion.
Felipe-Andrés Piedra, David Henke, Anubama Rajan, Donna M Muzny, Harsha Doddapaneni

Front Mol Biosci· January 2023

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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
Kimberly Walker, Divya Kalra, Rebecca Lowdon, Guangyi Chen, David Molik, David Morgan Henke

F1000Res· October 2022

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Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection.
Anubama Rajan, Felipe-Andrés Piedra, Letisha Aideyan, Trevor McBride, Matthew Robertson, David Henke

J Virol· April 2022

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Adult Memory T Cell Responses to the Respiratory Syncytial Virus Fusion Protein During a Single RSV Season (2018-2019).
Brittani N Blunck, Laura S Angelo, David Henke, Vasanthi Avadhanula, Matthew Cusick

Front Immunol· April 2022

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Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals.
Harsha Doddapaneni, Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, David Henke

PLoS One· September 2021

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Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.
Vahid Salimi, Mariana Viegas, Alfonsina Trento, Charles N Agoti, Larry J Anderson, David M Henke

Emerg Infect Dis· June 2021

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Humoral and Mucosal Antibody Response to RSV Structural Proteins in RSV-Infected Adult Hematopoietic Cell Transplant (HCT) Recipients.
Xunyan Ye, Obinna P Iwuchukwu, Vasanthi Avadhanula, Letisha O Aideyan, Trevor J McBride, David M Henke

Viruses· May 2021

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Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals.
Harsha Doddapaneni, Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, David Henke

bioRxiv· December 2020

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Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals.
Harsha Doddapaneni, Sara Javornik Cregeen, Richard Sucgang, Qingchang Meng, Xiang Qin, David Henke

bioRxiv· July 2020

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Reliable detection of subchromosomal deletions and duplications using cell-based noninvasive prenatal testing.
Liesbeth Vossaert, Qun Wang, Roseen Salman, Xinming Zhuo, Chunjing Qu, David Henke

Prenat Diagn· December 2018

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Publisher Correction: EMT cells increase breast cancer metastasis via paracrine GLI activation in neighbouring tumour cells.
Deepika Neelakantan, Hengbo Zhou, Michael U J Oliphant, Xiaomei Zhang, Lukas M Simon, David M Henke

Nat Commun· November 2018

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Design tools for MPRA experiments.
Andrew R Ghazi, Edward S Chen, David M Henke, Namrata Madan, Leonard C Edelstein

Bioinformatics· August 2018

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Combinatorial inhibition of PTPN12-regulated receptors leads to a broadly effective therapeutic strategy in triple-negative breast cancer.
Amritha Nair, Hsiang-Ching Chung, Tingting Sun, Siddhartha Tyagi, Lacey E Dobrolecki, David M Henke

Nat Med· May 2018

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The association between anterior nares and nasopharyngeal microbiota in infants hospitalized for bronchiolitis.
Pamela N Luna, Kohei Hasegawa, Nadim J Ajami, Janice A Espinola, David M Henke

Microbiome· January 2018

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EMT cells increase breast cancer metastasis via paracrine GLI activation in neighbouring tumour cells.
Deepika Neelakantan, Hengbo Zhou, Michael U J Oliphant, Xiaomei Zhang, Lukas M Simon, David M Henke

Nat Commun· June 2017

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Correction: Sequence variability of the respiratory syncytial virus (RSV) fusion gene among contemporary and historical genotypes of RSV/A and RSV/B.
Anne M Hause, David M Henke, Vasanthi Avadhanula, Chad A Shaw, Lorena I Tapia

PLoS One· June 2017

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