Publications by authors named "David Messina"

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Analytical performance of OncoPrism-HNSCC, an RNA-based assay to inform immune checkpoint inhibitor treatment decisions for recurrent/metastatic head and neck squamous cell carcinoma.
Jeffrey Hiken, Jon Earls, Kevin C Flanagan, Rachel L Wellinghoff, Michelle Ponder, David N Messina

BMC Cancer· January 2025

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Multicenter validation of an RNA-based assay to predict anti-PD-1 disease control in patients with recurrent or metastatic head and neck squamous cell carcinoma: the PREDAPT study.
Kevin C Flanagan, Jon Earls, Jeffrey Hiken, Rachel L Wellinghoff, Michelle M Ponder, David N Messina

J Immunother Cancer· November 2024

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Prognostic Significance of Immune Cell Infiltration in Muscle-invasive Bladder Cancer Treated with Definitive Chemoradiation: A Secondary Analysis of RTOG 0524 and RTOG 0712.
Zaker Rana, Sophia C Kamran, Amol C Shetty, Philip Sutera, Yang Song, David Messina

Eur Urol Oncol· October 2024

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Multidimensional biomarker predicts disease control in response to immunotherapy in recurrent or metastatic head and neck squamous-cell carcinoma.
Kevin C Flanagan, Jon Earls, Ian Schillebeeckx, Jeffrey Hiken, Rachel L Wellinghoff, David N Messina

J Cancer Res Clin Oncol· November 2023

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T cell subtype profiling measures exhaustion and predicts anti-PD-1 response.
Ian Schillebeeckx, Jon Earls, Kevin C Flanagan, Jeffrey Hiken, Alex Bode, David N Messina

Sci Rep· January 2022

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Analytical Performance of an Immunoprofiling Assay Based on RNA Models.
Ian Schillebeeckx, Jon R Armstrong, Jason T Forys, Jeffrey Hiken, Jon Earls, David N Messina

J Mol Diagn· April 2020

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Discovering viral genomes in human metagenomic data by predicting unknown protein families.
Mauricio Barrientos-Somarribas, David N Messina, Christian Pou, Fredrik Lysholm, Annelie Bjerkner

Sci Rep· January 2018

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Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade.
Thomas C Boothby, Jennifer R Tenlen, Frank W Smith, Jeremy R Wang, Kiera A Patanella, David N Messina

Proc Natl Acad Sci U S A· December 2015

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Using RNA Sequencing and In Silico Subtraction to Identify Resistance Gene Analog Markers for Lr16 in Wheat.
Nicole Rezac Harrison, Allan K Fritz, Jarret I Glasscock, Sara Ahmed, David N Messina

Plant Genome· July 2015

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Letter to the editor: SeqXML and OrthoXML: standards for sequence and orthology information.
Thomas Schmitt, David N Messina, Fabian Schreiber, Erik L L Sonnhammer

Brief Bioinform· September 2011

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InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.
Gabriel Ostlund, Thomas Schmitt, Kristoffer Forslund, Tina Köstler, David N Messina

Nucleic Acids Res· January 2010

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MetaTM - a consensus method for transmembrane protein topology prediction.
Martin Klammer, David N Messina, Thomas Schmitt, Erik L L Sonnhammer

BMC Bioinformatics· September 2009

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DASher: a stand-alone protein sequence client for DAS, the Distributed Annotation System.
David N Messina, Erik L L Sonnhammer

Bioinformatics· May 2009

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NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.
Todd Wylie, John Martin, Sahar Abubucker, Yong Yin, David Messina

BMC Genomics· November 2008

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Evolutionary and biomedical insights from the rhesus macaque genome.

Science· April 2007

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Physical map-assisted whole-genome shotgun sequence assemblies.
René L Warren, Dmitry Varabei, Darren Platt, Xiaoqiu Huang, David Messina

Genome Res· June 2006

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Gene expression in pharyngeal arch 1 during human embryonic development.
Juanliang Cai, David Ash, Lori E Kotch, Ethylin Wang Jabs, Tania Attie-Bitach, David N Messina

Hum Mol Genet· April 2005

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An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression.
David N Messina, Jarret Glasscock, Warren Gish, Michael Lovett

Genome Res· October 2004

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