Publications by authors named "David Rich"

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The Structure of Deviations From Maximum Parsimony for Densely-Sampled Data and Applications for Clade Support Estimation.
William Howard-Snyder, Will Dumm, Mary Barker, Ognian Milanov, Claris Winston, David H Rich

IEEE Trans Comput Biol Bioinform· December 2025

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Prenatal air pollution exposure and placental vasculature development among participants of the UPSIDE cohort study.
Shivram Kumar, Carolyn M Salafia, Ruchit Shah, Theresa Girardi, Richard K Miller, David Q Rich

Environ Res· December 2025

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Natural Experiments: An Efficient Tool for Population Respiratory Health Evaluation.
Daniel P Croft, David Q Rich

Am J Respir Crit Care Med· November 2025

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Separating selection from mutation in antibody language models.
Frederick A Matsen, Will Dumm, Kevin Sung, Mackenzie M Johnson, David Rich

bioRxiv· October 2025

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The structure of deviations from maximum parsimony for densely-sampled data and applications for clade support estimation.
William Howard-Snyder, Will Dumm, Mary Barker, Ognian Milanov, Claris Winston, David H Rich

ArXiv· September 2025

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A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-Encoder.
Frederick A Matsen, Kevin Sung, Mackenzie M Johnson, Will Dumm, David Rich

Mol Biol Evol· July 2025

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Accountability Assessment of Source-Specific Impacts of Regulations on Emissions and Air Quality Using Positive Matrix Factorization.
Ziqi Gao, Eric J Mei, Xin He, Stefanie Ebelt, David Q Rich

Environ Sci Technol· May 2025

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Ambient air pollution exposure and effects on neutralizing antibody titers following SARS-CoV-2 vaccination in adults.
Daniel P Croft, Carl J Johnston, Angela R Branche, David Q Rich, Philip K Hopke

PLOS Glob Public Health· May 2025

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Comparison of the rate of healthcare encounters for influenza from source-specific PM before and after tier 3 vehicle standards in New York state.
Daniel P Croft, Mark J Utell, Philip K Hopke, Han Liu, Shao Lin, David Q Rich

J Expo Sci Environ Epidemiol· April 2025

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Periods of susceptibility for associations between phthalate exposure and preterm birth: Results from a pooled analysis of 16 US cohorts.
Alexa Friedman, Barrett M Welch, Alexander P Keil, Michael S Bloom, Joseph M Braun, David Q Rich

Environ Int· April 2025

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Source specific fine particles and rates of asthma and COPD healthcare encounters pre- and post-implementation of the Tier 3 vehicle emissions control regulations.
Shao Lin, Yukang Xue, Sathvik Thandra, Quan Qi, Sally W Thurston, David Q Rich

J Hazard Mater· February 2025

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Gestational exposure to PM, NO, and sex steroid hormones: Identifying critical windows of exposure in the Rochester UPSIDE Cohort.
Mariah Kahwaji, Luke Duttweiler, Sally W Thurston, Donald Harrington, Richard K Miller, David Q Rich

Environ Epidemiol· February 2025

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Finding high posterior density phylogenies by systematically extending a directed acyclic graph.
Chris Jennings-Shaffer, David H Rich, Matthew Macaulay, Michael D Karcher, Tanvi Ganapathy

Algorithms Mol Biol· February 2025

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Benzo[]pyrene and phenanthrene hemoglobin adducts as biomarkers of longer-term air pollution exposure.
Xiangtian Wang, Yihui Ge, Yan Lin, Emily A Craig, Ruoxue Chen, Richard K Miller, David Q Rich

Environ Sci Process Impacts· January 2025

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PM and its components and respiratory disease healthcare encounters - Unanticipated increased exposure-response relationships in recent years after environmental policies.
Shao Lin, Yukang Xue, Sathvik Thandra, Quan Qi, Philip K Hopke, David Q Rich

Environ Pollut· November 2024

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Finding high posterior density phylogenies by systematically extending a directed acyclic graph.
Chris Jennings-Shaffer, David H Rich, Matthew Macaulay, Michael D Karcher, Tanvi Ganapathy

ArXiv· November 2024

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Systemic oxidative stress levels during the course of pregnancy: Associations with exposure to air pollutants.
Xiangtian Wang, Yan Lin, Yihui Ge, Emily Craig, Xiaodong Liu, Richard K Miller, David Q Rich

Environ Pollut· September 2024

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Exposure to Low-Level Air Pollution and Hyperglycemia Markers during Pregnancy: A Repeated Measure Analysis.
Yan Lin, Ruoxue Chen, Yihui Ge, Jessica Brunner, Philip K Hopke, Richard K Miller, David Q Rich

Environ Sci Technol· September 2024

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Associations of Gestational Exposure to Air Pollution and Polycyclic Aromatic Hydrocarbons with Placental Inflammation.
Emily A Craig, Yan Lin, Yihui Ge, Xiangtian Wang, Susan K Murphy, Richard K Miller, David Q Rich

Environ Health (Wash)· September 2024

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Spatial variability of pollution source contributions during two (2012-2013 and 2018-2019) sampling campaigns at ten sites in Los Angeles basin.
Ivana Stanimirova, David Q Rich, Armistead G Russell, Philip K Hopke

Environ Pollut· August 2024

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A case-crossover study of ST-elevation myocardial infarction and organic carbon and source-specific PM concentrations in Monroe County, New York.
Tianming Zhao, Philip K Hopke, Mark J Utell, Daniel P Croft, Sally W Thurston, David Q Rich

Front Public Health· August 2024

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Long term trends in source apportioned particle number concentrations in Rochester NY.
Philip K Hopke, Yunle Chen, David C Chalupa, David Q Rich

Environ Pollut· April 2024

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Primary Treatment Modification and Treatment Tolerability Among Older Chemotherapy Recipients With Advanced Cancer.
Mostafa R Mohamed, David Q Rich, Christopher Seplaki, Jennifer L Lund, Marie Flannery

JAMA Netw Open· February 2024

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nail: software for high-speed, high-sensitivity protein sequence annotation.
Jack W Roddy, David H Rich, Travis J Wheeler

bioRxiv· January 2024

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Racial and Ethnic Disparities in Phthalate Exposure and Preterm Birth: A Pooled Study of Sixteen U.S. Cohorts.
Barrett M Welch, Alexander P Keil, Jessie P Buckley, Stephanie M Engel, Tamarra James-Todd, David Q Rich

Environ Health Perspect· December 2023

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