Publications by authors named "Declan Bates"

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Digital Twins to Evaluate the Risk of Ventilator-Induced Lung Injury During Airway Pressure Release Ventilation Compared With Pressure-Controlled Ventilation.
William Joy, Beatrice Albanese, Diallo Oakley, Sonal Mistry, Kateryna Nikulina, Declan G Bates

Crit Care Med· December 2025

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Digital twins of acute hypoxemic respiratory failure and sepsis patients suggest potential benefits of bi-level high flow nasal cannula therapy.
Hossein Shamohammadi, Tommaso Mauri, Declan G Bates,

Intensive Care Med· December 2025

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Individualized Flow-Controlled versus Pressure-Controlled Ventilation in Cardiac Surgery: A Randomized Controlled Trial.
Simon Becker, Christian T Kurz, Romina Schnitzler, Johannes Geppert, Lisa-Marie Wichelhaus, Declan G Bates

Anesthesiology· November 2025

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Evaluating the effect of heart and respiratory rate measurement errors on the ability to predict the outcome of high flow nasal cannula therapy: a multi-centre study.
Hang Yu, Sina Saffaran, Roberto Tonelli, John G Laffey, Qingchen Zhang, Declan G Bates

Crit Care· November 2025

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Early prediction of non-invasive ventilation outcome using the TabPFN machine learning model: a multi-centre validation study.
Hang Yu, Sina Saffaran, Israel S Maia, Enrico Clini, Declan G Bates

Intensive Care Med· August 2025

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Safety-Guaranteed Lung-Protective Mechanical Ventilation using Digital Twins and Reinforcement Learning.
Sina M H Hajkarim, Prathyush P Menon, Nadir Yehya, William Joy, Declan G Bates

Annu Int Conf IEEE Eng Med Biol Soc· July 2025

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Gene Expression Depends on the Interplay Among Growth, Resource Biogenesis, and Nutrient Quality.
Juhyun Kim, Alexander P S Darlington, Said Muñoz-Montero, Rafael Montenegro, Perrine Dalby, Declan G Bates

ACS Synth Biol· June 2025

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Digital twins suggest a mechanistic basis for differing responses to increased flow rates during high-flow nasal cannula therapy.
Hossein Shamohammadi, Sina Saffaran, Roberto Tonelli, Valentina Chiavieri, Giacomo Grasselli, Declan G Bates

Intensive Care Med Exp· June 2025

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Machine learning models compared with current clinical indices to predict the outcome of high flow nasal cannula therapy in acute hypoxemic respiratory failure.
Hang Yu, Sina Saffaran, Roberto Tonelli, John G Laffey, Antonio M Esquinas, Declan G Bates

Crit Care· March 2025

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Design principles for engineering bacteria to maximise chemical production from batch cultures.
Ahmad A Mannan, Alexander P S Darlington, Reiko J Tanaka, Declan G Bates

Nat Commun· January 2025

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Airway pressures generated by high flow nasal cannula in patients with acute hypoxemic respiratory failure: a computational study.
Hossein Shamohammadi, Liam Weaver, Sina Saffaran, Roberto Tonelli, Marianna Laviola, Declan G Bates

Respir Res· January 2025

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Digital Twins of Acute Hypoxemic Respiratory Failure Patients Suggest a Mechanistic Basis for Success and Failure of Noninvasive Ventilation.
Liam Weaver, Hossein Shamohammadi, Sina Saffaran, Roberto Tonelli, Marianna Laviola, Declan G Bates

Crit Care Med· September 2024

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An in-silico porcine model of phosgene-induced lung injury predicts clinically relevant benefits from application of continuous positive airway pressure up to 8 h post exposure.
Sonal Mistry, Timothy E Scott, Bronwen Jugg, Rosi Perrott, Sina Saffaran, Declan G Bates

Toxicol Lett· January 2024

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Developing an Artificial Intelligence-Based Representation of a Virtual Patient Model for Real-Time Diagnosis of Acute Respiratory Distress Syndrome.
Chadi S Barakat, Konstantin Sharafutdinov, Josefine Busch, Sina Saffaran, Declan G Bates

Diagnostics (Basel)· June 2023

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Evaluating current guidelines for cardiopulmonary resuscitation using an integrated computational model of the cardiopulmonary system.
Clara Daudre-Vignier, Declan G Bates, Timothy E Scott, Jonathan G Hardman, Marianna Laviola

Resuscitation· May 2023

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A Theoretical Framework for Implementable Nucleic Acids Feedback Systems.
Nuno M G Paulino, Mathias Foo, Tom F A de Greef, Jongmin Kim, Declan G Bates

Bioengineering (Basel)· April 2023

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Computational Simulation of Virtual Patients Reduces Dataset Bias and Improves Machine Learning-Based Detection of ARDS from Noisy Heterogeneous ICU Datasets.
Konstantin Sharafutdinov, Sebastian Johannes Fritsch, Mina Iravani, Pejman Farhadi Ghalati, Sina Saffaran, Declan G Bates

IEEE Open J Eng Med Biol· February 2023

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Application and potential of artificial intelligence in neonatal medicine.
T'ng Chang Kwok, Caroline Henry, Sina Saffaran, Marisse Meeus, Declan Bates

Semin Fetal Neonatal Med· October 2022

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gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs.
Laurence Legon, Christophe Corre, Declan G Bates, Ahmad A Mannan

Bioinformatics· July 2022

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A computational cardiopulmonary physiology simulator accurately predicts individual patient responses to changes in mechanical ventilator settings.
Sonal Mistry, Bindi S Brook, Sina Saffaran, Marc Chikhani, David M Hannon, Declan G Bates

Annu Int Conf IEEE Eng Med Biol Soc· July 2022

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Why Reduced Inspiratory Pressure Could Determine Success of Non-Invasive Ventilation in Acute Hypoxic Respiratory Failure.
Liam Weaver, Sina Saffaran, Marc Chikhani, John G Laffey, Tim E Scott, Declan G Bates

Annu Int Conf IEEE Eng Med Biol Soc· July 2022

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Optimising respiratory support for early COVID-19 pneumonia: a computational modelling study.
Liam Weaver, Anup Das, Sina Saffaran, Nadir Yehya, Marc Chikhani, Declan G Bates

Br J Anaesth· June 2022

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Modeling Mechanical Ventilation In Silico-Potential and Pitfalls.
David M Hannon, Sonal Mistry, Anup Das, Sina Saffaran, John G Laffey, Declan G Bates

Semin Respir Crit Care Med· June 2022

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Validation of at-the-bedside formulae for estimating ventilator driving pressure during airway pressure release ventilation using computer simulation.
Sonal Mistry, Anup Das, Sina Saffaran, Nadir Yehya, Timothy E Scott, Declan G Bates

Respir Res· April 2022

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Restoring circadian gene profiles in clock networks using synthetic feedback control.
Mathias Foo, Ozgur E Akman, Declan G Bates

NPJ Syst Biol Appl· February 2022

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