Publications by authors named "Dewu Ding"

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A Scalable and Robust Ensemble Deep Learning Method for Predicting Drug-Target Interactions.
Zhixing Cheng, Qunfang Yan, Dewu Ding, Yanrui Ding

Interdiscip Sci· October 2025

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Active Protein Network Analysis Reveals Coordinated Modules and Critical Proteins Involving Extracellular Electron Transfer Process.
Dewu Ding, Wei Wang, Meineng Wang, Jianming Xie

Genes (Basel)· May 2025

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Prediction of Drug-Target Interactions With High- Quality Negative Samples and a Network-Based Deep Learning Framework.
Zhixing Cheng, Deling Xu, Dewu Ding, Yanrui Ding

IEEE J Biomed Health Inform· March 2025

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A review of emission characteristics and risk assessments of volatile organic compounds in petrochemical industry areas.
Jinchan Peng, Yunxia Feng, Anshan Xiao, Bo Li, Dewu Ding

Environ Pollut· February 2025

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GCNA-Cluster: A Gene Co-Expression Network Alignment to Cluster Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal Adenocarcinoma.
Jing Yang, Zhengshu Lu, Xu Chen, Deling Xu, Dewu Ding, Yanrui Ding

IEEE/ACM Trans Comput Biol Bioinform· December 2023

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Combining non-negative matrix factorization with graph Laplacian regularization for predicting drug-miRNA associations based on multi-source information fusion.
Mei-Neng Wang, Yu Li, Li-Lan Lei, De-Wu Ding, Xue-Jun Xie

Front Pharmacol· February 2023

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A weighted non-negative matrix factorization approach to predict potential associations between drug and disease.
Mei-Neng Wang, Xue-Jun Xie, Zhu-Hong You, De-Wu Ding, Leon Wong

J Transl Med· December 2022

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SPCMLMI: A structural perturbation-based matrix completion method to predict lncRNA-miRNA interactions.
Mei-Neng Wang, Li-Lan Lei, Wei He, De-Wu Ding

Front Genet· November 2022

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Characteristics, influence factors, and health risk assessment of volatile organic compounds through one year of high-resolution measurement at a refinery.
Yunxia Feng, Dewu Ding, Anshan Xiao, Bo Li, Runzhong Jia

Chemosphere· June 2022

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Condition-Specific Molecular Network Analysis Revealed That Flagellar Proteins Are Involved in Electron Transfer Processes of WP3.
Dewu Ding, Meineng Wang, Meili Wu, Chengzhi Gan, Pu Wu

Genet Res (Camb)· January 2022

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Genome-scale mutant fitness reveals versatile c-type cytochromes in Shewanella oneidensis MR-1.
Dewu Ding, Meili Wu, Yanfen Liu

Mol Omics· April 2021

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Transcriptional regulatory module analysis reveals that bridge proteins reconcile multiple signals in extracellular electron transfer pathways.
Dewu Ding, Chuanjun Shu, Xiao Sun

Proteins· January 2020

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A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella.
Dewu Ding, Xiao Sun

IEEE/ACM Trans Comput Biol Bioinform· August 2019

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Network-Based Methods for Identifying Key Active Proteins in the Extracellular Electron Transfer Process in Shewanella oneidensis MR-1.
Dewu Ding, Xiao Sun

Genes (Basel)· January 2018

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Predicting and Interpreting the Structure of Type IV Pilus of Electricigens by Molecular Dynamics Simulations.
Chuanjun Shu, Ke Xiao, Changchang Cao, Dewu Ding, Xiao Sun

Molecules· August 2017

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The accessible chromatin landscape during conversion of human embryonic stem cells to trophoblast by bone morphogenetic protein 4.
Yajun Liu, Dewu Ding, Hongde Liu, Xiao Sun

Biol Reprod· June 2017

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K-shell Analysis Reveals Distinct Functional Parts in an Electron Transfer Network and Its Implications for Extracellular Electron Transfer.
Dewu Ding, Ling Li, Chuanjun Shu, Xiao Sun

Front Microbiol· May 2016

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Identifying the potential extracellular electron transfer pathways from a c-type cytochrome network.
De-Wu Ding, Jun Xu, Ling Li, Jian-Ming Xie, Xiao Sun

Mol Biosyst· December 2014

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Of fish and men: a comparative study for genome-scale metabolic networks.
Dewu Ding

Theor Biol Forum· September 2014

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Are cellular networks really self-similar?
Dewu Ding, Long Ying

Theor Biol Forum· December 2012

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The self-similarity of trunk metabolism.
Dewu Ding, Xiangrong He

Riv Biol· January 2011

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Metabolic pathway analysis with Petri Nets.
Dewu Ding, Xiaoqing He

Riv Biol· August 2010

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Application of constraint-based methods in Staphylococcus aureus metabolic network.
Dewu Ding, Xiaoqing He, Kezhong Lu, Pu Wu, Haisheng Huang

Riv Biol· August 2010

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Why giant strong component is so important for metabolic networks?
Dewu Ding, Lina Li

Riv Biol· October 2009

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Robustness in B. thuringiensis metabolic network.
Dewu Ding, Yanrui Ding, Kezhong Lu, Shouwen Chen, Yujie Cai

Riv Biol· March 2009

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