Publications by authors named "Dustin Ebert"

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A compendium of human gene functions derived from evolutionary modelling.
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Anushya Muruganujan, Suzanna E Lewis, Dustin Ebert

Nature· April 2025

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Enrichment on steps, not genes, improves inference of differentially expressed pathways.
Nicholas Markarian, Kimberly M Van Auken, Dustin Ebert, Paul W Sternberg

PLoS Comput Biol· March 2024

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The Gene Ontology knowledgebase in 2023.

Genetics· May 2023

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Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.
Zhu Liu, Tremayne Mushayahama, Bryan Queme, Dustin Ebert, Anushya Muruganujan

Nucleic Acids Res· July 2022

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PANTHER: Making genome-scale phylogenetics accessible to all.
Paul D Thomas, Dustin Ebert, Anushya Muruganujan, Tremayne Mushayahama, Laurent-Philippe Albou

Protein Sci· January 2022

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PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.
Huaiyu Mi, Dustin Ebert, Anushya Muruganujan, Caitlin Mills, Laurent-Philippe Albou

Nucleic Acids Res· January 2021

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PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence.
Caitlin Mills, Anushya Muruganujan, Dustin Ebert, Crystal N Marconett, Juan Pablo Lewinger

PLoS One· January 2021

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PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference.
Peifen Zhang, Tanya Z Berardini, Dustin Ebert, Qian Li, Huaiyu Mi

Plant Direct· December 2020

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Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).
Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Dustin Ebert, Caitlin Mills

Nat Protoc· March 2019

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PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.
Huaiyu Mi, Anushya Muruganujan, Dustin Ebert, Xiaosong Huang, Paul D Thomas

Nucleic Acids Res· January 2019

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