Publications by authors named "Dylan Dodd"

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gutSMASH 2.0: Extended Identification of Primary Metabolic Gene Clusters From the Human Gut Microbiota.
Yijun Zhu, Hannah E Augustijn, Victòria Pascal Andreu, Arjan Draisma, Gilles P van Wezel, Dylan Dodd

J Mol Biol· November 2025

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Microbiota and kidney disease: the road ahead.
Patricia P Bloom, Wendy S Garrett, Kristina L Penniston, Mari-Karoliina H Winkler, Stanley L Hazen, Dylan Dodd

Nat Rev Nephrol· October 2025

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Gut bacteria degrade purines via the 2,8-dioxopurine pathway.
Yuanyuan Liu, Zhiwei Zhou, J Bryce Jarman, Haoqing Chen, Michelle Miranda-Velez, Dylan Dodd

Nat Microbiol· September 2025

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The Gut Microbiome in Hyperuricemia and Gout.
Robert Terkeltaub, Dylan Dodd

Arthritis Rheumatol· August 2025

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IsoPairFinder: A tool for biochemical pathway discovery using stable isotope tracing metabolomics.
Zhiwei Zhou, Yuanyuan Liu, Mingxun Wang, Dylan Dodd

bioRxiv· August 2025

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γδ T cell antigen receptor polyspecificity enables T cell responses to a broad range of immune challenges.
Jing Guo, Roshni Roy Chowdhury, Vamsee Mallajosyula, Jianming Xie, Megha Dubey, Dylan Dodd

Proc Natl Acad Sci U S A· January 2024

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gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota.
Victòria Pascal Andreu, Hannah E Augustijn, Lianmin Chen, Alexandra Zhernakova, Jingyuan Fu, Dylan Dodd

Nat Biotechnol· October 2023

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A widely distributed gene cluster compensates for uricase loss in hominids.
Yuanyuan Liu, J Bryce Jarman, Yen S Low, Hannah E Augustijn, Steven Huang, Dylan Dodd

Cell· September 2023

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A widely distributed gene cluster compensates for uricase loss in hominids.
Yuanyuan Liu, J Bryce Jarman, Yen S Low, Hannah E Augustijn, Steven Huang, Dylan Dodd

Cell· August 2023

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Targeted Quantification of Amino Acids by Dansylation.
Yuanyuan Liu, Haoqing Chen, Dylan Dodd

Methods Mol Biol· June 2023

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Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta.
Cecilia Noecker, Juan Sanchez, Jordan E Bisanz, Veronica Escalante, Margaret Alexander, Dylan Dodd

PLoS Biol· May 2023

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Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid.
Kali M Pruss, Haoqing Chen, Yuanyuan Liu, William Van Treuren, Steven K Higginbottom, Dylan Dodd

Nat Commun· January 2023

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Tutorial: Microbiome studies in drug metabolism.
Dylan Dodd, Isaac Cann

Clin Transl Sci· December 2022

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The gut metabolite indole-3 propionate promotes nerve regeneration and repair.
Elisabeth Serger, Lucia Luengo-Gutierrez, Jessica S Chadwick, Guiping Kong, Luming Zhou, Dylan Dodd

Nature· July 2022

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Role of insulin resistance and the gut microbiome on urine oxalate excretion in ob/ob mice.
Hong Xiang, Haoqing Chen, Yuanyuan Liu, Dylan Dodd, Alan C Pao

Physiol Rep· July 2022

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Clostridium sporogenes uses reductive Stickland metabolism in the gut to generate ATP and produce circulating metabolites.
Yuanyuan Liu, Haoqing Chen, William Van Treuren, Bi-Huei Hou, Steven K Higginbottom, Dylan Dodd

Nat Microbiol· May 2022

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Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization.
Kali M Pruss, Fatima Enam, Eric Battaglioli, Mary DeFeo, Oscar R Diaz, Dylan Dodd

Nat Metab· January 2022

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The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota.
Victòria Pascal Andreu, Jorge Roel-Touris, Dylan Dodd, Michael A Fischbach, Marnix H Medema

Nucleic Acids Res· July 2021

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A metabolomics pipeline for the mechanistic interrogation of the gut microbiome.
Shuo Han, Will Van Treuren, Curt R Fischer, Bryan D Merrill, Brian C DeFelice, Dylan Dodd

Nature· July 2021

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alters the gut microbiota and modulates the functional metabolism of T regulatory cells in the context of immune checkpoint blockade.
Shan Sun, Lingjie Luo, Wenhua Liang, Qian Yin, Jing Guo, Dylan Dodd

Proc Natl Acad Sci U S A· November 2020

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An oral bacterial cocktail for kidney protection.
John Jarman, Dylan Dodd

Nat Biomed Eng· September 2020

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Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi.
Siddhika Pareek, Takashi Kurakawa, Bhabatosh Das, Daisuke Motooka, Shuuichi Nakaya, Dylan Dodd

NPJ Biofilms Microbiomes· June 2020

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Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches.
Padma Maruvada, Johanna W Lampe, David S Wishart, Dinesh Barupal, Deirdra N Chester, Dylan Dodd

Adv Nutr· March 2020

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Microbial Contribution to the Human Metabolome: Implications for Health and Disease.
William Van Treuren, Dylan Dodd

Annu Rev Pathol· January 2020

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Depletion of microbiome-derived molecules in the host using genetics.
Chun-Jun Guo, Breanna M Allen, Kamir J Hiam, Dylan Dodd, Will Van Treuren

Science· December 2019

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