Publications by authors named "Eby Sim"

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Emergence of : novel insights into zoonotic reservoirs and genomic epidemiology.
Benedict T Hugh, Eby M Sim, Taryn Crighton, Vitali Sintchenko

Front Public Health· May 2025

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Estimating the deferred value of pathogen genomic data for secondary use.
Vitali Sintchenko, Eby M Sim, Carl J E Suster

Sci Data· May 2025

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Microbiological treatment failure associated with macrolide-resistant .
David Prabhakar, Winkie Fong, Eby M Sim, Annaleise R Howard-Jones, Trang Nguyen

ASM Case Rep· May 2025

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Implementing a national programme of pathogen genomics for public health: the Australian Pathogen Genomics Program (AusPathoGen).
Jessica R Webb, Patiyan Andersson, Eby Sim, Alireza Zahedi, Angela Donald

Lancet Microbe· March 2025

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Can genomics and meteorology predict outbreaks of legionellosis in urban settings?
Verlaine J Timms, Eby Sim, Keenan Pey, Vitali Sintchenko

Appl Environ Microbiol· August 2024

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Genomic characteristics of prospectively sequenced from respiratory and non-respiratory sources.
Xiaomei Zhang, Connie Lam, Eby Sim, Elena Martinez, Taryn Crighton

iScience· July 2024

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Exploring programmatic indicators of tuberculosis control that incorporate routine sequencing in low incidence settings: a comprehensive (2017-2021) patient cohort analysis.
Xiaomei Zhang, Elena Martinez, Connie Lam, Taryn Crighton, Eby Sim

Lancet Reg Health West Pac· December 2023

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Advancing pathogen genomics in resource-limited settings.
Paul Michael Pronyk, Ruklanthi de Alwis, Rebecca Rockett, Kerri Basile, Yann Felix Boucher, Eby Sim

Cell Genom· December 2023

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Genomic markers of drug resistance in populations with minority variants.
Xiaomei Zhang, Connie Lam, Elena Martinez, Eby Sim, Taryn Crighton

J Clin Microbiol· October 2023

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Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics.
Eby M Sim, Qinning Wang, Peter Howard, Rady Kim, Ling Lim

PLoS One· August 2023

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SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes.
Winkie Fong, Rebecca J Rockett, Jessica E Agius, Shona Chandra, Jessica Johnson-Mckinnon, Eby Sim

BMC Infect Dis· May 2023

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The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason, David R Greig, Lauren A Cowley, Sally R Partridge, Elena Martinez, Eby M Sim

Nat Commun· April 2023

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Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason, David R Greig, Lauren A Cowley, Sally R Partridge, Elena Martinez, Eby M Sim

Nat Commun· April 2023

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Pangenome Analysis of a Salmonella Enteritidis Population Links a Major Outbreak to a Gifsy-1-Like Prophage Containing Anti-Inflammatory Gene .
Adam J Svahn, Carl J E Suster, Sheryl L Chang, Rebecca J Rockett, Eby M Sim

Microbiol Spectr· March 2023

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Genomes of Vibrio cholerae O1 Serotype Ogawa Associated with Current Cholera Activity in Pakistan.
Eby M Sim, Elena Martinez, Grace A Blackwell, David Pham, Gretschen Millan

Microbiol Resour Announc· January 2023

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Genomic and transcriptomic variation in Bordetella spp. following induction of erythromycin resistance.
Winkie Fong, Verlaine Timms, Eby Sim, Keenan Pey, Trang Nguyen

J Antimicrob Chemother· October 2022

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Case report: a genomics-guided reclassification of a blood culture isolate misassigned by MALDI-TOF as .
Eby M Sim, Bryant Koh, Jimmy Ng, Trang Nguyen, Qinning Wang

Access Microbiol· October 2022

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Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance.
Rebecca J Rockett, Jenny Draper, Mailie Gall, Eby M Sim, Alicia Arnott

Nat Commun· May 2022

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Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use.
Rebecca Rockett, Kerri Basile, Susan Maddocks, Winkie Fong, Jessica E Agius, Eby M Sim

N Engl J Med· April 2022

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Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing in New South Wales, Australia.
Eby M Sim, Ryan Kim, Mailie Gall, Alicia Arnott, Peter Howard

Front Microbiol· December 2021

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Microbial Genomics as a Catalyst for Targeted Antivirulence Therapeutics.
Vitali Sintchenko, Verlaine Timms, Eby Sim, Rebecca Rockett, Nathan Bachmann

Front Med (Lausanne)· April 2021

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Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling.
Rebecca J Rockett, Alicia Arnott, Connie Lam, Rosemarie Sadsad, Verlaine Timms, Eby M Sim

Nat Med· September 2020

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Visualization of Phage Genomic Data: Comparative Genomics and Publication-Quality Diagrams.
Dann Turner, J Mark Sutton, Darren M Reynolds, Eby M Sim, Nicola K Petty

Methods Mol Biol· June 2018

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Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.
Ricaurte Alejandro Marquez-Ortiz, Leanne Haggerty, Narda Olarte, Carolina Duarte, Ulises Garza-Ramos, Eby M Sim

Genome Biol Evol· June 2017

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First Complete Providencia rettgeri Genome Sequence, the NDM-1-Producing Clinical Strain RB151.
R Alejandro Marquez-Ortiz, Leanne Haggerty, Eby M Sim, Carolina Duarte, Betsy E Castro-Cardozo

Genome Announc· January 2017

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