Publications by authors named "Eduardo D Sontag"

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Quantitative Pharmacology Methods for Bispecific T Cell Engagers.
Mahdiar Sadeghi, Irina Kareva, Gleb Pogudin, Eduardo D Sontag

Bull Math Biol· May 2025

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Understanding therapeutic tolerance through a mathematical model of drug-induced resistance.
Jana L Gevertz, James M Greene, Samantha Prosperi, Natacha Comandante-Lou, Eduardo D Sontag

NPJ Syst Biol Appl· April 2025

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Partitioning of a 2-bit hash function across 66 communicating cells.
Jai P Padmakumar, Jessica J Sun, William Cho, Yangruirui Zhou, Christopher Krenz, Eduardo D Sontag

Nat Chem Biol· February 2025

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Recovering biomolecular network dynamics from single-cell omics data requires three time points.
Shu Wang, Muhammad Ali Al-Radhawi, Douglas A Lauffenburger, Eduardo D Sontag

NPJ Syst Biol Appl· August 2024

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What cannot be seen correctly in 2D visualizations of single-cell 'omics data?
Shu Wang, Eduardo D Sontag, Douglas A Lauffenburger

Cell Syst· September 2023

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Epigenetic factor competition reshapes the EMT landscape.
M Ali Al-Radhawi, Shubham Tripathi, Yun Zhang, Eduardo D Sontag, Herbert Levine

Proc Natl Acad Sci U S A· October 2022

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Author Correction: Engineered promoters enable constant gene expression at any copy number in bacteria.
Thomas H Segall-Shapiro, Eduardo D Sontag, Christopher A Voigt

Nat Biotechnol· May 2022

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A synthetic distributed genetic multi-bit counter.
Tianchi Chen, M Ali Al-Radhawi, Christopher A Voigt, Eduardo D Sontag

iScience· December 2021

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Comment on "In vivo flow cytometry reveals a circadian rhythm of circulating tumor cells".
Amber L Williams, Jessica E Fitzgerald, Fernando Ivich, Eduardo D Sontag, Mark Niedre

Light Sci Appl· September 2021

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Maximizing average throughput in oscillatory biochemical synthesis systems: an optimal control approach.
M Ali Al-Radhawi, Michael Margaliot, Eduardo D Sontag

R Soc Open Sci· September 2021

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Derivation of stationary distributions of biochemical reaction networks via structure transformation.
Hyukpyo Hong, Jinsu Kim, M Ali Al-Radhawi, Eduardo D Sontag, Jae Kyoung Kim

Commun Biol· May 2021

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Delicate Balances in Cancer Chemotherapy: Modeling Immune Recruitment and Emergence of Systemic Drug Resistance.
Anh Phong Tran, M Ali Al-Radhawi, Irina Kareva, Junjie Wu, David J Waxman, Eduardo D Sontag

Front Immunol· April 2021

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A mathematical model exhibiting the effect of DNA methylation on the stability boundary in cell-fate networks.
Tianchi Chen, M Ali Al-Radhawi, Eduardo D Sontag

Epigenetics· April 2021

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Universal features of epidemic models under social distancing guidelines.
Mahdiar Sadeghi, James M Greene, Eduardo D Sontag

Annu Rev Control· April 2021

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A novel COVID-19 epidemiological model with explicit susceptible and asymptomatic isolation compartments reveals unexpected consequences of timing social distancing.
Jana L Gevertz, James M Greene, Cynthia H Sanchez-Tapia, Eduardo D Sontag

J Theor Biol· February 2021

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Perfect adaptation of CD8 T cell responses to constant antigen input over a wide range of affinities is overcome by costimulation.
Nicola Trendel, Philipp Kruger, Stephanie Gaglione, John Nguyen, Johannes Pettmann, Eduardo D Sontag

Sci Signal· January 2021

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Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer.
Kaitlyn E Johnson, Grant R Howard, Daylin Morgan, Eric A Brenner, Andrea L Gardner, Eduardo D Sontag

Phys Biol· November 2020

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Short-Term Circulating Tumor Cell Dynamics in Mouse Xenograft Models and Implications for Liquid Biopsy.
Amber L Williams, Jessica E Fitzgerald, Fernando Ivich, Eduardo D Sontag, Mark Niedre

Front Oncol· November 2020

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Distributed Implementation of Boolean Functions by Transcriptional Synthetic Circuits.
M Ali Al-Radhawi, Anh Phong Tran, Elizabeth A Ernst, Tianchi Chen, Christopher A Voigt, Eduardo D Sontag

ACS Synth Biol· August 2020

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Mathematical Details on a Cancer Resistance Model.
James M Greene, Cynthia Sanchez-Tapia, Eduardo D Sontag

Front Bioeng Biotechnol· June 2020

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Mathematical Models of Protease-Based Enzymatic Biosensors.
Deepak K Agrawal, Elliott M Dolan, Nancy E Hernandez, Kristin M Blacklock, Sagar D Khare, Eduardo D Sontag

ACS Synth Biol· February 2020

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A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks.
M Ali Al-Radhawi, David Angeli, Eduardo D Sontag

PLoS Comput Biol· February 2020

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Inferring reaction network structure from single-cell, multiplex data, using toric systems theory.
Shu Wang, Jia-Ren Lin, Eduardo D Sontag, Peter K Sorger

PLoS Comput Biol· December 2019

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In vitro implementation of robust gene regulation in a synthetic biomolecular integral controller.
Deepak K Agrawal, Ryan Marshall, Vincent Noireaux, Eduardo D Sontag

Nat Commun· December 2019

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Stochastic analysis of genetic feedback controllers to reprogram a pluripotency gene regulatory network.
Simone Bruno, M Ali Al-Radhawi, Eduardo D Sontag, Domitilla Del Vecchio

Proc Am Control Conf· July 2019

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